PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27327
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 277aa    MW: 29942.1 Da    PI: 4.5144
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27327genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-141966249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              rie +  r+v +skRr g++ KA  L vL++a+va + fs+tg+ + +
  EMT27327 19 RIEQEDARYVCYSKRRMGLFTKATDLAVLTGAQVAALAFSPTGRAFSF 66
              89*****************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-201069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.961070IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-201180IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-121232IPR002100Transcription factor, MADS-box
PfamPF003194.4E-181966IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-123247IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-124768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAPNRRGGS GRKKTVIRRI EQEDARYVCY SKRRMGLFTK ATDLAVLTGA QVAALAFSPT  60
GRAFSFGHPS VDSVVERFLA GEAAGAAARE EGAADDRLLA GEGAGEGAAG EDKKLENLLQ  120
EFNELRTELA EVKKWTKRTD KAMAKERSAG DQIAAWFDPK VRDMGDEDMA AFFAALMQEQ  180
GFEAGMDMQQ MVMAALPPSQ VVAAGVDMQE MPPPPGLAAG MDMEQMQMTM PKPPGFDAGL  240
DMEIDQWLNV MLPPPEIPAG METVQQGLHQ PNAGFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185570.11e-155agamous-like MADS-box protein AGL29
TrEMBLM8CJ540.0M8CJ54_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT273270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-21M-type_MADS family protein