PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27326
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 256aa    MW: 28581 Da    PI: 9.0999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-142875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+  v+++G ++W+  a+  g++Rt+k+c++rw +yl
         EMT27326 28 KGPWTEQEDMKLAWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 75
                     79********************************************97 PP

2Myb_DNA-binding569e-1881125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++++E+ l vd+++++G++ W++Ia+ m+ gRt++++k++w+++
         EMT27326  81 RGRMSPDEERLVVDLHARWGNR-WSRIAKAMP-GRTDNEIKNYWRTH 125
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4722575IPR017930Myb domain
SuperFamilySSF466891.92E-2826122IPR009057Homeodomain-like
SMARTSM007171.1E-122777IPR001005SANT/Myb domain
PfamPF002491.4E-132875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-192981IPR009057Homeodomain-like
CDDcd001672.56E-93075No hitNo description
PROSITE profilePS5129424.43676130IPR017930Myb domain
SMARTSM007171.2E-1580128IPR001005SANT/Myb domain
PfamPF002491.6E-1581125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2382128IPR009057Homeodomain-like
CDDcd001672.43E-1183125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKMKQTKKTS APSPGKQEEA VAPGGFRKGP WTEQEDMKLA WFVRLFGERR WDFLAKVSGL  60
NRTGKSCRLR WVNYLHPDLK RGRMSPDEER LVVDLHARWG NRWSRIAKAM PGRTDNEIKN  120
YWRTHTRKLH KDTRAASAAS ASTSMSAASP GTTSSSSSST IDNDNNSHHG HRDQETAASQ  180
EQADHQLLYT AGIGMDSHLL WNDAIMDSYA WGAAVPSMIV PPPSSPVWDY CCSDSLWGIG  240
DDEVEYKKML AVAGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26281284103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519390.0JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185558.10.0transcription factor MYB59-like
SwissprotQ4JL761e-61MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM8CU740.0M8CU74_AEGTA; Myb-related protein MYBAS2
STRINGEMT273260.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-60myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]