PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28581 Da PI: 9.0999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ v+++G ++W+ a+ g++Rt+k+c++rw +yl EMT27326 28 KGPWTEQEDMKLAWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9e-18 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++++E+ l vd+++++G++ W++Ia+ m+ gRt++++k++w+++ EMT27326 81 RGRMSPDEERLVVDLHARWGNR-WSRIAKAMP-GRTDNEIKNYWRTH 125 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.472 | 25 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.92E-28 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 29 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-9 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.436 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 81 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.43E-11 | 83 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKMKQTKKTS APSPGKQEEA VAPGGFRKGP WTEQEDMKLA WFVRLFGERR WDFLAKVSGL 60 NRTGKSCRLR WVNYLHPDLK RGRMSPDEER LVVDLHARWG NRWSRIAKAM PGRTDNEIKN 120 YWRTHTRKLH KDTRAASAAS ASTSMSAASP GTTSSSSSST IDNDNNSHHG HRDQETAASQ 180 EQADHQLLYT AGIGMDSHLL WNDAIMDSYA WGAAVPSMIV PPPSSPVWDY CCSDSLWGIG 240 DDEVEYKKML AVAGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 28 | 128 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951939 | 0.0 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185558.1 | 0.0 | transcription factor MYB59-like | ||||
Swissprot | Q4JL76 | 1e-61 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | M8CU74 | 0.0 | M8CU74_AEGTA; Myb-related protein MYBAS2 | ||||
STRING | EMT27326 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-60 | myb domain protein 59 |
Publications ? help Back to Top | |||
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