PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | LFY | ||||||||
Protein Properties | Length: 143aa MW: 15955.3 Da PI: 9.5126 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 239.2 | 2e-73 | 21 | 128 | 278 | 385 |
FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLC 378 P vtnqvfrya k+gasyinkPkmrhYvhCYalhcLde+as+alrra+k+rgenvGawrqacy+plv+iaar+g+didavf+ahprL+iWYvPt+LrqLC EMT27095 21 PCHVTNQVFRYASKVGASYINKPKMRHYVHCYALHCLDEDASDALRRAYKARGENVGAWRQACYAPLVDIAARHGFDIDAVFAAHPRLAIWYVPTRLRQLC 121 999************************************************************************************************** PP FLO_LFY 379 hlerska 385 h++rs++ EMT27095 122 HQARSAH 128 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.7E-74 | 21 | 128 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MTWRQRQGEG PSLGCRVAGL PCHVTNQVFR YASKVGASYI NKPKMRHYVH CYALHCLDED 60 ASDALRRAYK ARGENVGAWR QACYAPLVDI AARHGFDIDA VFAAHPRLAI WYVPTRLRQL 120 CHQARSAHDA AAAHAGAMPP PMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 3e-62 | 21 | 126 | 56 | 161 | PROTEIN LEAFY |
2vy2_A | 3e-62 | 21 | 126 | 56 | 161 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB231888 | 0.0 | AB231888.1 Triticum aestivum WFLa mRNA for FLORICAULA/LEAFY-like protein, complete cds. | |||
GenBank | AB231890 | 0.0 | AB231890.1 Triticum aestivum WFLd mRNA for FLORICAULA/LFAFY-like protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152169.1 | 2e-83 | probable transcription factor FL | ||||
Swissprot | A2XX39 | 3e-71 | FL_ORYSI; Probable transcription factor FL | ||||
TrEMBL | M8BQ00 | 1e-101 | M8BQ00_AEGTA; Putative transcription factor FL | ||||
STRING | EMT27095 | 1e-102 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8269 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-60 | floral meristem identity control protein LEAFY (LFY) |