PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT27068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 542aa MW: 60631.9 Da PI: 8.7723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.8 | 2.6e-33 | 65 | 231 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk.......................kvkaeekewyfFskrdkky 68 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp+ v+ + + +fF++ +k+y EMT27068 65 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLPEriiivygklclvshislsslchdGVTMDGLSKHFFHRPSKAY 162 799************.99******999667544333..3444433445**********6699*******9999988887665444455588********** PP NAM 69 atgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l EMT27068 163 TTGTRKRRKiqtecdvhKGETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 231 ********75666664433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-35 | 58 | 250 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.371 | 65 | 250 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-15 | 66 | 231 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPGS LNGAIPHIVL MELTGVNCKK 60 DWLGLPAGVK FDPTDQELIE HLEAKVREEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPE 120 RIIIVYGKLC LVSHISLSSL CHDGVTMDGL SKHFFHRPSK AYTTGTRKRR KIQTECDVHK 180 GETRWHKTGK TRPVMANGRQ KGCKKILVLY TNFGKHRKPE KTNWVMHQYH LGDLEEEKEG 240 ELVVCKIFYQ TQPRQCSWSA SSDRGGAGGA VAIAAAAAVT VQEQRMRDSG SGSSSSRDHE 300 ALSATSYPAG YAMAAAVEMQ HLKHSGDHFS FAPFRKSFEE VGIGADQVPS DQLGRSEHQQ 360 HAGQEQQPHR PELATTAVPA TSFLISRPTN PISATVPPPL QHTSVVLDHD QFHVPAIFLH 420 HDKFQNMQQQ QQHQQKIDRR SAGLEELVMG CTSTCTKGFM EIVLSRRLRF LTPKRQNGLT 480 HTGLLTTKII MDSSNKTGKY QIKQKQPRPL SLASMVSPSS NIRYCFLGEC TTVNWEKNRE 540 IS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190511.1 | 0.0 | uncharacterized protein LOC109776267 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-130 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | M8BZ45 | 0.0 | M8BZ45_AEGTA; NAC domain-containing protein 8 | ||||
STRING | EMT27068 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-104 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
---|---|---|---|
|