PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55267.1 Da PI: 5.7412 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.3e-06 | 264 | 285 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H EMT26835 264 FCVICGKGFKRDANLRMHMRGH 285 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.6E-5 | 261 | 288 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 263 | 290 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 263 | 285 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 264 | 289 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 265 | 285 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 68 | 312 | 345 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 350 | 372 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MASDASGNTE PGQQGVRFSS MDQSCFARPG QSIPGYPPFF GPQSSNFYLP DDSVAKACDL 60 FEPNPPQNNP VADWDPQAML SNLTFLEQKI KQVKDIVQSM GNRGSQDAGG SCELAAKQQL 120 VTADLTSIII QLISTAGSML PSMKTPLLSS NPAVRQLNTP GSPMGFGSIV NQRPSTIREE 180 VVNDISKTSD YEELMNTLNT AHDEKDDLIK CPNPCVGEGP EPVPMEDHDV KESDDGGEAE 240 HLPPGSYVVL QLEKEEILAP HTHFCVICGK GFKRDANLRM HMRGHGDEYK TPAALAKPMR 300 DSGSDPTPVT RYSCPYVGCK RNKEHRKFQP LKTILCVKNH YKRSHCDKRY TCSRCNTKKF 360 SVIADLKTHE KHCGRDKWLC SCGTTFSRKD KLFGHVALFQ GHTPALPMDD IKASGALEQP 420 QGSEAMDDMV ASTGYNFPGS TSDGIPNLDM KVADDTRGYF SPLNFDPCFG ALDDFARPGF 480 DISENPFSFL PSGPGSCSFG QLSGDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF034806 | 0.0 | KF034806.1 Triticum aestivum isolate D cultivar Saloio STOP1 gene, complete cds. | |||
GenBank | KF034807 | 0.0 | KF034807.1 Triticum aestivum isolate D cultivar Ruivo STOP1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166559.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A3B6H2G4 | 0.0 | A0A3B6H2G4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453G130 | 0.0 | A0A453G130_AEGTS; Uncharacterized protein | ||||
STRING | EMT26835 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-156 | C2H2 family protein |
Publications ? help Back to Top | |||
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