PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26600
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 305aa    MW: 33885.5 Da    PI: 4.643
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26600genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.33.9e-131359349
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              i n+  r  tf kRr  ++K A  +S L+ a+vav++  ++gk++ +
  EMT26600 13 IHNDKDRDLTFYKRRSDLFKRATDISALTRARVAVVLETNNGKMHSF 59
              89*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-5162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.245363IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-14672IPR002100Transcription factor, MADS-box
PfamPF003192.9E-141359IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPRKERRSGV AYIHNDKDRD LTFYKRRSDL FKRATDISAL TRARVAVVLE TNNGKMHSFG  60
TPLADPIVDA FLFGAPPAVT SADEATTARI RSLQNEVAQL DMENMTEEDK NQLSILRMKN  120
IQEENPDKTG GTCVAQDLQL PSVEDHLGTT HSLMQSSWPQ NHSQLQLPSD PLPSQLEQTS  180
APLFPMQEPQ MFHSAPPSLA PYMASHVQPI PNQVHEQTPQ EELHVQNYES PCNIVQPQQN  240
HANHDSTYGQ NLEASPLLGY SSGNAFSIDD PFNTEQWGYA LSDQSCYNSF LGMDAYLGSS  300
GTDLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.10.0floral homeotic protein APETALA 1-like
TrEMBLM8BNM20.0M8BNM2_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT266000.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-09AGAMOUS-like 62