PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26527
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WOX
Protein Properties Length: 431aa    MW: 45252.1 Da    PI: 10.5181
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26527genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox443.8e-143393257
              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              r+R+t+++eq+ +Le+ F++   +p ++   ++ k l     + +++V++WFqNrR + ++
  EMT26527 33 RSRWTPKPEQILILESIFNSgMVNPPKDGTVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93
              89*****************99*************9999999*****************997 PP
2Wus_type_Homeobox103.81.1e-333295265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+ + ri++ Le++G+++d+NVfyWFQNr++R+r++q
           EMT26527 32 VRSRWTPKPEQILILESIFNSGMVNPPKDGTVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-71194IPR009057Homeodomain-like
PROSITE profilePS5007110.6892994IPR001356Homeobox domain
SuperFamilySSF466891.45E-1229101IPR009057Homeodomain-like
SMARTSM003892.6E-53198IPR001356Homeobox domain
PfamPF000467.1E-123393IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEGGSNSPDG QSSGGSPEER RSSGGRGAGE PVRSRWTPKP EQILILESIF NSGMVNPPKD  60
GTVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAASSA AAANSLPAAS  120
ATIGLPSGTC SVHPMAIGGG ASQYEQQATS SSSSGSTGGS SLGLFAAHGA GVSGAGVGYL  180
QASCGTSSPL ASGLMPDVDS GGRAQPRRAA AVLLVPIAGS DDHGVHQRSP NGGPEGSNRL  240
ASHVWPGRGA PPLHRDPPPS QRLWHSDSEP ANGRKLFSGN HPYRLSSPFF FMKLACQLHG  300
GDVVWRRGGI NGRPGKRSGA ILLIEKQVNL PIWVTPRDKS RLCGCPLIDP IKNHALDGCP  360
GTEKDAFKGE RQGGVPRPTT IAPSSLPNFV VVMQLFGAFA CLLDRTWSTN VHAAFVRGHC  420
KPLDVPCYPL L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284131e-114KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8CH340.0M8CH34_AEGTA; WUSCHEL-related homeobox 6
STRINGEMT265270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-30WUSCHEL related homeobox 12