PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26420
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 268aa    MW: 28729.8 Da    PI: 6.595
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26420genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.54.8e-157384778
              SSEEETTT--SS--S-STTTT-------S--- CS
       SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
              s fh l efDe+krsCr+rL++hn+rrrk+q 
  EMT26420  7 SLFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 38
              78***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.734136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-12641IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.6E-4723IPR004333Transcription factor, SBP-box
PfamPF031103.9E-8735IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGYHVSLFH LLAEFDEAKR SCRKRLDGHN RRRRKPQVDS MNSGSFMTTQ QGTRFASFSA  60
PRPEPSWSGI IKSEDSNPYY TSTHQINFAG SSSSYSKEGR RFPFLHEGDQ MSFSTGATAL  120
EIPPVCQPLL KAVAPPPPPP ESSSSNKMFS DGQLTHVLDS DCALSLLSSP ANSSSVDVSR  180
MVRPSEHIPS VPNLQQFGSS SWFACSQASS AATGFAAFAG GMDGEQLNAG GALVPSSNDN  240
EMNCHGIFHV GADGSSEGTS PSLPFSWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11835KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178563.11e-166squamosa promoter-binding-like protein 18
SwissprotQ0J0K18e-84SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLM8BN470.0M8BN47_AEGTA; Squamosa promoter-binding-like protein 18
STRINGEMT264200.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-14SBP family protein