PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 42380.4 Da PI: 7.7492 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 28 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++e+ EMT26194 28 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASgcGREK 127 79****************************.89***************988899****************************************9999999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy+g+ pkg kt+ +m+eyrl EMT26194 128 VGVKKALVFYRGKPPKGLKTNGIMQEYRL 156 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-60 | 25 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.144 | 28 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-24 | 29 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGSSDSSSGS APPRHQPPPP QQGSAPELPP GFRFHPTDEE LVVHYLKKKA AKVPLPVTII 60 AEVDLYKFDP WELPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPIMA 120 SGCGREKVGV KKALVFYRGK PPKGLKTNGI MQEYRLTDAS SSATTSRPPP VTGGSRAASL 180 RLDDWVLCRI YKKINKAAAG DQQRSMECED SVEDAVTAYP PYATAGMTGA GAHGSNYDSL 240 LHHQDSHEDN FLDGLLTAED AGLSAGATSL SHLAAAARAS PAPTKQFLAP SSSTPFNWLD 300 ASTVGILPQA RNFPGFNRSR NVGNMSLSST ADMAVDNGGG NAINAMPPFM NHLPVQDGTY 360 HQQHVILGAP LAPEATAAAT SAFQHPVQIS GVNWNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-70 | 28 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-70 | 28 | 197 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-70 | 28 | 197 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM820890 | 0.0 | KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200235.1 | 0.0 | NAC transcription factor NAM-B2 | ||||
Swissprot | A0SPJ6 | 0.0 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | M8BW64 | 0.0 | M8BW64_AEGTA; NAC domain-containing protein 18 | ||||
STRING | EMT26194 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-90 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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