PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT26094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 21573.2 Da PI: 8.5096 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 90 | 101 | 1 | 12 |
EEETTTTEEESS CS zf-C2H2 1 ykCpdCgksFsr 12 +kC+ CgksFs+ EMT26094 90 FKCSVCGKSFSS 101 89********96 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r+H EMT26094 160 HRCSICQKEFPTGQALGGHKRKH 182 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.8E-8 | 90 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-8 | 90 | 112 | No hit | No description |
SMART | SM00355 | 3.7 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-8 | 155 | 182 | No hit | No description |
Pfam | PF13912 | 3.6E-12 | 159 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSSSAMEALH ALIPEQHQRD VEAAAALSGA TSGEESGHVL QGWAKRKRSR RQRSEEENLA 60 LCLLMLSRGG KQRVQAPQPE AFAAPVPAEF KCSVCGKSFS SYPAPGGHKT SHRVKQPSPP 120 ADAAAAPLVA LPAVAAVLPS AEPATSSTAA SSDGTTNRVH RCSICQKEFP TGQALGGHKR 180 KHYDGGVGAA ASSTELLAAA AAESEVGSTG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | WHTWZF1A | 0.0 | D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds. | |||
GenBank | WHTWZF1B | 0.0 | D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167815.1 | 1e-146 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-110 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | M8BVW0 | 1e-148 | M8BVW0_AEGTA; Zinc finger protein 1 | ||||
STRING | EMT26094 | 1e-149 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 4e-18 | zinc-finger protein 1 |