PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT26066

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 366aa MW: 40189.5 Da PI: 8.8458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT26066	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	196	243	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN+++ eL +l+P + +k ++Ka+i Av+++++Lq EMT26066 196 DHTIAERRRRQKINQRLMELSTLIPGL----KKQMNKATIIGDAVKHVRELQ 243 599*********************9....566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.684	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-17	195	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	195	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-12	196	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.51E-14	197	246	No hit	No description
SMART	SM00353	2.4E-13	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEGVVARTSP SWIARNPVQL GGWTHENGTE RDYDGEWVKL YIRWDGGQDK VIGDITRSNM 60 ARGAVWLDQK EAKWQCLCSD RERPQGCGDG APVPFCTVFP LQALCTAPQP LPTAADDNPD 120 LVVQIDNQYR DSSSGDAVVH ATVARGRKPM SWKSSAASTQ SAARGGHKRA AGRRSGSNLQ 180 GSAASASSMS PDPAKDHTIA ERRRRQKINQ RLMELSTLIP GLKKQMNKAT IIGDAVKHVR 240 ELQEKVNILE NNNRHAATTT VCSTVLIHKN RPCLGDLTSN YGDDYVGQPS QLGTWLPEIK 300 VRFSDKSVLV QIHCENTNGL LVRVLAEVEV LRLAITHTSS MPCLADTTII NITAKASGTH 360 RYFFHC

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEGVVARTSP SWIARNPVQL GGWTHENGTE RDYDGEWVKL YIRWDGGQDK VIGDITRSNM  60
ARGAVWLDQK EAKWQCLCSD RERPQGCGDG APVPFCTVFP LQALCTAPQP LPTAADDNPD  120
LVVQIDNQYR DSSSGDAVVH ATVARGRKPM SWKSSAASTQ SAARGGHKRA AGRRSGSNLQ  180
GSAASASSMS PDPAKDHTIA ERRRRQKINQ RLMELSTLIP GLKKQMNKAT IIGDAVKHVR  240
ELQEKVNILE NNNRHAATTT VCSTVLIHKN RPCLGDLTSN YGDDYVGQPS QLGTWLPEIK  300
VRFSDKSVLV QIHCENTNGL LVRVLAEVEV LRLAITHTSS MPCLADTTII NITAKASGTH  360
RYFFHC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174836.1	1e-149	transcription factor bHLH25-like
TrEMBL	M8CQX8	0.0	M8CQX8_AEGTA; Transcription factor bHLH25
STRING	EMT26066	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-27	bHLH family protein