PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 21995 Da PI: 5.3023 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.7 | 2.6e-13 | 86 | 125 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++Ed l+v++ + +G++ W+tIa+ + gRt++ +k+rw+++ EMT25955 86 EQEDMLIVKYQATYGNR-WSTIAEFLS-GRTDNAIKNRWNSV 125 68***************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.41E-11 | 76 | 126 | No hit | No description |
PROSITE profile | PS51294 | 14.997 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-10 | 80 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 86 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-11 | 86 | 126 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-12 | 86 | 130 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSRCVWALEE EHMLSALSEI CDTGCRIGHV HEEQQETKAI QARGMVMSPS SFPATSVSDA 60 VASDGDGLPH AAKKMWTKRE DDLLREQEDM LIVKYQATYG NRWSTIAEFL SGRTDNAIKN 120 RWNSVLHKHA PSLQAETCAT ARECLEMFPL APGDIRANAA AAAPPSDMTC GVGDPLTELR 180 LWSAARVVFD VMPLQAYRM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951919 | 7e-74 | JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198995.1 | 1e-87 | transcription factor MYB44-like | ||||
TrEMBL | M8BLT4 | 1e-147 | M8BLT4_AEGTA; Uncharacterized protein | ||||
STRING | EMT25955 | 1e-148 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-12 | myb domain protein 73 |