PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25887
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 309aa    MW: 33651 Da    PI: 7.6243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25887genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.3e-111050242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i+nks r  t+  R + +  KA ELS+LC+a+++v+++ +
  EMT25887 10 YIKNKSSRRRTLDTRMKNLASKARELSILCNAKACVLVYDE 50
              59************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.124152IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-16176IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-12160IPR002100Transcription factor, MADS-box
CDDcd002661.46E-17284No hitNo description
PRINTSPR004048.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003199.7E-101152IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MARKKIALQY IKNKSSRRRT LDTRMKNLAS KARELSILCN AKACVLVYDE GNAAPKVYPS  60
HAEAADLLNR YRTMAEGRFK KTVNQEDFLS QRLSKLQVEE NKVRDPEIRI LLHKAMLGSD  120
LPDLKVDELT IVSSRLEEIL KSMGESIAKI SGQPPVLQPQ VPYIPDNVDM GGSSAMYQAS  180
QPAPYVTNNM DMGPFAMNQQ PSPTPYVTGS MHVGSPMMYQ VPPQHEGWLD KVRSGRDLDA  240
LAHNSYNCAG HDGANTSTGA GYSTNGHDGA GTSANAGSSG GMKSLDVGFG WQSGGVDPEE  300
SSWSLFPPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170132.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A453PWR80.0A0A453PWR8_AEGTS; Uncharacterized protein
TrEMBLM8CFH20.0M8CFH2_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT258870.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.12e-20M-type_MADS family protein