PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT25773

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 263aa MW: 29798.2 Da PI: 5.9146

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT25773	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	179.8	2e-55	10	261	140	374
GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvslese 223 lR+T v++ + e l+ t+ La Ae+l++ f+f+++ + + l++e L++ ++Eal++ + lqlhrll + +++ + EMT25773 10 QILRLTIVNE----EDEFLSVTRGLLAWEAESLHIGFQFHPVKLHINQLLSIEPLNFMSDEALVIVSTLQLHRLLadefvevaahphdrkgkVQAHATMTR 106 579*****....8999*******************866677788*********************************99998444444446 PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleea 322 d++L+ + +lsPk++ v+eqeadhn+ +F+ rf +al+yy alfd+le+++p+ er+ +Er ll +ei+++vac ga++rerhe++ kW er+++a EMT25773 107 ADALLRDLAELSPKLMLVTEQEADHND-EFMGRFDNALNYYGALFDALEESIPARGlaIERSDMERCLLLQEIRDIVACDGAQHRERHERMVKWAERMKAA 206 99*******************76.7********************998779************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvk..sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 GF ++++s +a++q +l ++v ++yrv +++ ++++ W d pL+svS Wr EMT25773 207 GFASAAMSADAVAQTVMLGQMVTgcRREYRVSsKKDLCFFIHWCDIPLFSVSTWR 261 *****************9987788945577888*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.916	1	238	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-53	10	261	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MRLGAGAHNQ ILRLTIVNEE DEFLSVTRGL LAWEAESLHI GFQFHPVKLH INQLLSIEPL 60 NFMSDEALVI VSTLQLHRLL ADEFVEVAAH PHDRKGKVQA HATMTRADAL LRDLAELSPK 120 LMLVTEQEAD HNDEFMGRFD NALNYYGALF DALEESIPAR GLAIERSDME RCLLLQEIRD 180 IVACDGAQHR ERHERMVKWA ERMKAAGFAS AAMSADAVAQ TVMLGQMVTG CRREYRVSSK 240 KDLCFFIHWC DIPLFSVSTW RAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-16	2	260	153	378	Protein SCARECROW
5b3h_A	2e-16	2	260	152	377	Protein SCARECROW
5b3h_D	2e-16	2	260	152	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188264.1	0.0	scarecrow-like protein 3
TrEMBL	M8BVE4	0.0	M8BVE4_AEGTA; Uncharacterized protein
STRING	EMT25773	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13716	13	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	3e-24	scarecrow-like 3