PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25575
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 290aa    MW: 31761.3 Da    PI: 4.9531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25575genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W++++r  g++R++k+c++rw++yl
         EMT25575 16 KGLWSPEEDEKLYNHILRYGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 63
                     678*******************************************97 PP
2Myb_DNA-binding49.41.1e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++ +v +++ lG++ W+ Ia++++ gRt+++++ +w++
         EMT25575  69 RGTFSQEEEDHIVALHQILGNR-WSQIASHLP-GRTDNEIRTFWNS 112
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9211167IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-231166IPR009057Homeodomain-like
SuperFamilySSF466892.06E-2813110IPR009057Homeodomain-like
SMARTSM007172.2E-131565IPR001005SANT/Myb domain
PfamPF002491.6E-141663IPR001005SANT/Myb domain
CDDcd001672.61E-111963No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2567118IPR009057Homeodomain-like
PROSITE profilePS5129419.11568118IPR017930Myb domain
SMARTSM007177.7E-1468116IPR001005SANT/Myb domain
PfamPF002497.3E-1469112IPR001005SANT/Myb domain
CDDcd001673.90E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRPSSGGVG QPKLRKGLWS PEEDEKLYNH ILRYGVGCWS SVPRLAGLHR CGKSCRLRWL  60
NYLRPDLKRG TFSQEEEDHI VALHQILGNR WSQIASHLPG RTDNEIRTFW NSCIKKKLRQ  120
QGIDPATHKP MASGAVTAAL PDVEVEDRKP LAAAADGSLA LKQSAEFDPF PVCADYGGGV  180
AGDLGAANAA ALYVQFGDCK DGADDDAGFG AADYSCVLDV SENLGYGESS SNSSNWNYGG  240
EVGSVLDGEV LHWAKAEMEQ QHDEPLEHKF SLPCQEQSLA NFEFNLEQYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28101181108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0669460.0KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158679.10.0myb-related protein Hv33-like
SwissprotP200271e-158MYB3_HORVU; Myb-related protein Hv33
TrEMBLM8BKR00.0M8BKR0_AEGTA; Myb-related protein Hv33
STRINGEMT255750.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-70myb domain protein 86