PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 348aa MW: 39877.4 Da PI: 9.1616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.1e-12 | 232 | 278 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT++E+ l++++ G g Wk I++++ Rt q+ s+ qky EMT25469 232 KGFWTPDEHRLFLHGLSICGRGKWKDISKHFVPSRTSTQISSHAQKY 278 688*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.517 | 227 | 283 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.24E-16 | 230 | 284 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-9 | 231 | 281 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 232 | 278 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-9 | 233 | 278 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.8E-12 | 234 | 281 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 7.72E-9 | 235 | 279 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MQPLPFLQSR ALCRLPLYRL TYRRALRSET AGLRNPPVGS LFLMVANDDK FPKDDRFPDI 60 DNLLGTLPFS YLYSCIQISI VIHSKEPQVC TMNPRVNQEW TPSEVEGARS IIDWLKNNYC 120 NDGTIYGINK KHEIVGTLQA WFPRKTMQQC LEKEYHGTNS DHGVNYTVDG HAHKNFWLQE 180 AAMQGTDFLF GCPLKSMQTM DTQQEVSMVE QNKVVLENRM RIHQPVLAPR AKGFWTPDEH 240 RLFLHGLSIC GRGKWKDISK HFVPSRTSTQ ISSHAQKYFM RLKSKGSGSQ RYRINDAELN 300 DANPWKMKST INSWQALAFQ STVGADNQNP SFDLQTLSSP FVTMNNIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156757.1 | 1e-137 | uncharacterized protein LOC109742093 | ||||
TrEMBL | M8BU22 | 0.0 | M8BU22_AEGTA; Myb-like protein J | ||||
STRING | EMT25469 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23650.1 | 7e-18 | Homeodomain-like transcriptional regulator |