PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25342
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TALE
Protein Properties Length: 265aa    MW: 30272.5 Da    PI: 7.4334
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25342genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.8e-101822162155
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               k +yps++e+  LA+++gL+++q+ +WF N+R ++
  EMT25342 182 KWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 216
               569*****************************885 PP
2ELK43.85.2e-15136157122
       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
               ELKhqLlrKY+gy gsL+qEF+
  EMT25342 136 ELKHQLLRKYGGYVGSLRQEFC 157
               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.4E-2253104IPR005541KNOX2
PfamPF037915.5E-2057103IPR005541KNOX2
PROSITE profilePS5121311.453136156IPR005539ELK domain
PfamPF037896.7E-11136157IPR005539ELK domain
SMARTSM011889.7E-8136157IPR005539ELK domain
PROSITE profilePS5007112.795156219IPR001356Homeobox domain
SuperFamilySSF466891.84E-19158228IPR009057Homeodomain-like
SMARTSM003893.0E-13158223IPR001356Homeobox domain
CDDcd000862.46E-14159219No hitNo description
Gene3DG3DSA:1.10.10.606.0E-28161222IPR009057Homeodomain-like
PfamPF059201.3E-16176215IPR008422Homeobox KN domain
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MCIRRRRFID YECFVNLKMI CRLNSSEVGA PPEVLERLSA VAAKLDAGHG RGKHESPRPD  60
PELDQFMEAY CNMLAKYREE LARPIQEATE VFKSVGRRLD SITFTDSTNC EGAGSSEDEL  120
DTSCVEEIDP SAEDKELKHQ LLRKYGGYVG SLRQEFCKRR KKGKLPKEAR QKLLHWWELH  180
SKWPYPSETE KIALAESTGL DQKQINNWFI NQRKRHWKPA PEDMPFSVMD GGVGVGVSFL  240
PAPQGPALYM DRAPFMVDGM YRLGS
Functional Description ? help Back to Top
Source Description
UniProtPlays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434550.0AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156617.11e-168homeobox protein rough sheath 1-like
SwissprotQ418531e-97RSH1_MAIZE; Homeobox protein rough sheath 1
TrEMBLM8CDZ60.0M8CDZ6_AEGTA; Homeobox protein rough sheath 1
STRINGEMT253420.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-79KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Schneeberger RG,Becraft PW,Hake S,Freeling M
    Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
    Genes Dev., 1995. 9(18): p. 2292-304
    [PMID:7557382]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]