PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 401aa MW: 45090.2 Da PI: 5.9543 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 236 | 282 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT+eE++ ++ + + +G g+Wk I++++ +++t+ q+ s+ qk+ EMT25286 236 RKFWTKEEHKSFLYGLEVYGRGDWKNISKHFVTTKTPVQVSSHAQKF 282 678******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.463 | 231 | 287 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.16E-16 | 235 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-9 | 235 | 288 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 235 | 285 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.7E-13 | 235 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 239 | 281 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-9 | 239 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MYDDNDDKNK KHNYIVNSLH ALFPSKTMKQ VTHLYIDLAV EMHMSQRREG THVTSGSPQN 60 IFTFCYPVNG NYELLPMEEN GASSTHGIYT MGDHANENFG VREEATIVDN NGLSFGCAME 120 NTGITVTGEA PLMADNNKMK VLENNISIDQ PVVAPHQWGF WTDEEHSMGG LVNENFEVQE 180 DEGTAMDDNR FSFHCALEDT RIRKTEEAPM MVDKNKMVVL ENNTSVDRPA VAAHQRKFWT 240 KEEHKSFLYG LEVYGRGDWK NISKHFVTTK TPVQVSSHAQ KFFKRIEKKA SSGTKHYSIN 300 DVRLHDNELL AANNSSAPRQ TLSFTSLNND PSYRLQAPTS SFAVMNNLAQ CSPSIYNQQV 360 GQQPMWREQQ MMGSTAAVMG GVGNYVPDGQ QGSAYFYLGN V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169907.1 | 0.0 | uncharacterized protein LOC109755400 | ||||
TrEMBL | M8CP19 | 0.0 | M8CP19_AEGTA; Myb-like protein J | ||||
STRING | EMT25286 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 9e-19 | MYB family protein |