PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT24975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HSF | ||||||||
Protein Properties | Length: 251aa MW: 28430.4 Da PI: 10.2238 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 99.3 | 3.7e-31 | 19 | 111 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k++++++d++++ ++ w +n+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ + weF+h+sF +g+ +ll i EMT24975 19 FVAKTFHMVSDPATDAVVCWGGASNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDV---------WEFAHESFLRGQAKLLPLIV 106 9********************999****************************************9877.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkk++ EMT24975 107 RKKKR 111 *9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-34 | 11 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-47 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.07E-31 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-27 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.7E-17 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.7E-17 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.7E-17 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGSECKGHQP QDDGGVAPFV AKTFHMVSDP ATDAVVCWGG ASNTFLVLDP AAFSDFLLPS 60 YFKHRNFASF VRQLNTYGFR KVDPDVWEFA HESFLRGQAK LLPLIVRKKK RAGAGAAGRE 120 LCEEEEEVRG TIQAVQRLRD ERRGMEEELQ AMDRRLRAAE NRPGQMMAFL ASSRTTRAWC 180 YAPWSPRRRS WLRPAPVASI QARIRGGGSG PTPDAELTLR IRRPRAGPCR SPYLIWDRCS 240 TDRPWEPRVD R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-25 | 15 | 108 | 16 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208552 | 0.0 | KF208552.1 Triticum aestivum heat shock factor C1b (HsfC1b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179067.1 | 1e-122 | heat stress transcription factor C-1b-like | ||||
Swissprot | Q942D6 | 1e-99 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | M8BIZ3 | 0.0 | M8BIZ3_AEGTA; Heat stress transcription factor C-1b | ||||
STRING | EMT24975 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-51 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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