PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT24643

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 1068aa MW: 119209 Da PI: 6.0858

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24643	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.2e-09	662	710	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lvd+v+q+G+g W+ I r Rt ++k++w+++l EMT24643 662 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNLL 710 7*************************9999999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.283	655	714	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-12	656	713	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-14	657	716	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-9	659	712	IPR001005	SANT/Myb domain
CDD	cd11660	2.01E-17	661	711	No hit	No description
Pfam	PF00249	5.8E-6	662	710	IPR001005	SANT/Myb domain
Pfam	PF17035	1.0E-5	1012	1047	IPR027353	NET domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MVSHHRSRSL RRHASLLHPS FRRALREGTA GLRNPASRDP VRERGDQVFG EHTRTTAGSD 60 DFTDDDFFPD LGNLFLNNMG DNLNANGAAS VAPYVFLSFL FEIVQHGVNK PTDSDSSEST 120 AAATFRNPGR IDSHKFLAQT KRPKDPRYKV DTLQGAQETK NGENDFEENG SLDPVVYQLV 180 RVEGDGTLVP PTEDEVLQIE QFLDDKVDLP SIDDVGNVED FFTNDCMLLK EPDFEEGYSE 240 LETNGEIHTQ QFDADLEVDR LKPSDDSLDI PSKCTVVHDH KPDKLNTEQG DNNIVHQDNA 300 STETPKSTVL NDSCSAEKEK ADACSRSVNN SSTGPSVSGV TSSVPDFSIL RGEVCLDNLT 360 IRELQEAFRA TFGRETTVKD KLWLKRRITM GLTNSCDVQS SGCVVKDYKI VCKDAKHKLP 420 TIEGLPKVEV EATSLVRFQV LGSGNERDTS SCSYYRSEDQ QRSSNRLKGV STDNDESEGT 480 LQDEQGAAKR LRKPTKRYIE ELADTETLDS TGKLSSPGKR AAHGEVLLRQ RVTPLQEVDS 540 LSITYPTRKD TFGGFSVHVP YASRMRRGRP RRNFISFLDD DPPVECPEVQ MAVETMLGKD 600 GEHVNHKNAE KKGGHIETAE KKGGHIETAD NKEIRSIEAD DICRTDAKTK TKRGLKRKHH 660 RAWTLSEVLK LVDGVAQFGP GKWSEIRRLS FASYSYRTSV DLKDKWRNLL RASQTQLSPE 720 NDGVCPRKSN PSIIPIPPAI LLRVKELAEL QPQAGNLAAA IKFSGQSSKV AQGRACICVQ 780 YVHRDCHTFE VGHTEDVDLT KYQIIGMSRD SSERNVSRIG PIEHYKNIIS ELLLGKEGTF 840 SSGVTKQTEV VMAQYNRKEG EDSLPLFMEE IRGLSKCDME RLKHALHEVF TILSDEVDEI 900 FGCIFALSEF RSEKLPSNHG SGSYEDGIAP PSVKKQKTVT VSTIDAYEES HGHIDSDIFA 960 QLTRDIRLIE ESGKTRQEAA KMFSDGLLRK LAKMEQGVYD LLDTVASKCR SMTTPEKIEL 1020 GRRIRKLPET ALDHMVEVVK MRRPEILVSD KVSFSLGRLV LNLSVPTT

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MVSHHRSRSL RRHASLLHPS FRRALREGTA GLRNPASRDP VRERGDQVFG EHTRTTAGSD  60
DFTDDDFFPD LGNLFLNNMG DNLNANGAAS VAPYVFLSFL FEIVQHGVNK PTDSDSSEST  120
AAATFRNPGR IDSHKFLAQT KRPKDPRYKV DTLQGAQETK NGENDFEENG SLDPVVYQLV  180
RVEGDGTLVP PTEDEVLQIE QFLDDKVDLP SIDDVGNVED FFTNDCMLLK EPDFEEGYSE  240
LETNGEIHTQ QFDADLEVDR LKPSDDSLDI PSKCTVVHDH KPDKLNTEQG DNNIVHQDNA  300
STETPKSTVL NDSCSAEKEK ADACSRSVNN SSTGPSVSGV TSSVPDFSIL RGEVCLDNLT  360
IRELQEAFRA TFGRETTVKD KLWLKRRITM GLTNSCDVQS SGCVVKDYKI VCKDAKHKLP  420
TIEGLPKVEV EATSLVRFQV LGSGNERDTS SCSYYRSEDQ QRSSNRLKGV STDNDESEGT  480
LQDEQGAAKR LRKPTKRYIE ELADTETLDS TGKLSSPGKR AAHGEVLLRQ RVTPLQEVDS  540
LSITYPTRKD TFGGFSVHVP YASRMRRGRP RRNFISFLDD DPPVECPEVQ MAVETMLGKD  600
GEHVNHKNAE KKGGHIETAE KKGGHIETAD NKEIRSIEAD DICRTDAKTK TKRGLKRKHH  660
RAWTLSEVLK LVDGVAQFGP GKWSEIRRLS FASYSYRTSV DLKDKWRNLL RASQTQLSPE  720
NDGVCPRKSN PSIIPIPPAI LLRVKELAEL QPQAGNLAAA IKFSGQSSKV AQGRACICVQ  780
YVHRDCHTFE VGHTEDVDLT KYQIIGMSRD SSERNVSRIG PIEHYKNIIS ELLLGKEGTF  840
SSGVTKQTEV VMAQYNRKEG EDSLPLFMEE IRGLSKCDME RLKHALHEVF TILSDEVDEI  900
FGCIFALSEF RSEKLPSNHG SGSYEDGIAP PSVKKQKTVT VSTIDAYEES HGHIDSDIFA  960
QLTRDIRLIE ESGKTRQEAA KMFSDGLLRK LAKMEQGVYD LLDTVASKCR SMTTPEKIEL  1020
GRRIRKLPET ALDHMVEVVK MRRPEILVSD KVSFSLGRLV LNLSVPTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951931	0.0	JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570524.1	0.0	uncharacterized protein LOC100846611 isoform X2
TrEMBL	M8BS57	0.0	M8BS57_AEGTA; Uncharacterized protein
STRING	EMT24643	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6966	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-77	TRF-like 6