PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24571
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 437aa    MW: 49083.7 Da    PI: 4.7231
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24571genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-341212122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sw + gn+fvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+ ik
      EMT24571 121 FLTKTYDLVEDPATDQVVSWGRAGNTFVVWDPHVFAEALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKMIK 208
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      EMT24571 209 RRKP 212
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-58117210IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-35117210IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-38117210IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-18121144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-31121210IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18159171IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340160184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18172184IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDAMPPAGIV KEEEARLHEE HTHPQAGPQQ QDGALPRPME GLHEAGPPPF LTKTYDLVED  60
PATDQVGRGS AMDAMPPEGI VKGEEVLRHE EHTHPQAGPQ QQDGALPRPM EGLHEAGPPP  120
FLTKTYDLVE DPATDQVVSW GRAGNTFVVW DPHVFAEALL PRLFKHSNFS SFVRQLNTYG  180
FRKVDPDRWE FANEGFLRGQ RHLLKMIKRR KPPSNAPSSQ QQALTSCLEV GEFGFEEEID  240
RLKRDKNLLI TEVVKLRQEQ QATKDNVQAM EGRLRAAEQR QAQMMGFLAK AMRNPHFFQQ  300
LVQKQDKRKE LEDAISKKRR RPIDNAPFYG PGATTTQSEQ LDSQFLFDSG VLTEPGMNGM  360
ENLAQNIQEL GQGKTDEEKK DEANGQLDIN NDFWAELFSD DFGDGDGSGL SELEGRRPED  420
IDELAQQLGY LSSTSPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2411621012120Heat shock factor protein 1
5d5u_B4e-2411621021129Heat shock factor protein 1
5d5v_B4e-2411621021129Heat shock factor protein 1
5d5v_D4e-2411621021129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209LKMIKRR
2306320KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2913940.0KU291394.1 Triticum aestivum heat shock transcription factor A6e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147337.10.0heat stress transcription factor A-2c-like isoform X1
RefseqXP_020147338.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLM8CM700.0M8CM70_AEGTA; Heat stress transcription factor A-2c
STRINGEMT245710.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]