PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT24564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 33454.9 Da PI: 9.3981 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.8e-11 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ g + +c++rw +yl EMT24564 14 KGAWTKEEDQRLIAHIKAHGEGCWRSLPKAAGttysyL--Y-LSCRLRWINYL 63 79******************************887552..2.49*******97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.6e-18 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++ EMT24564 69 RGNFTDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 113 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.772 | 9 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-26 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-8 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-9 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 15 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-8 | 16 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.528 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-13 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-28 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRSACCEKA HTNKGAWTKE EDQRLIAHIK AHGEGCWRSL PKAAGTTYSY LYLSCRLRWI 60 NYLRPDLKRG NFTDEEDELI IKLHEFLGNK WSLIAGRLPG RTDNEIKNYW NTHVKRKLLA 120 RGVDPQTHRP LNAGTAAVQG MHTPSSPVVA SGASPHQLAG GSSCSPDASG HSSDADDSVS 180 LPPSLAGNLG VGMIDLNLSI SPPCEPPLSR EADAMPIIKE SKPRFSAFQK LSRCLSHQSM 240 NVYAAISPGP SKDIKGLAVT LHSGKGVDSS IDQRRNVLGQ KTRDPSIPPE KNFVTFSHRG 300 ADQAIKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 13 | 118 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF226140 | 0.0 | KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201126.1 | 1e-147 | myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-80 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | M8BRD9 | 0.0 | M8BRD9_AEGTA; Myb-related protein 308 | ||||
STRING | EMT24564 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-79 | myb domain protein 4 |
Publications ? help Back to Top | |||
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