PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24564
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 307aa    MW: 33454.9 Da    PI: 9.3981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24564genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-111463148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +k +G g+W++ ++  g     +     +c++rw +yl
         EMT24564 14 KGAWTKEEDQRLIAHIKAHGEGCWRSLPKAAGttysyL--Y-LSCRLRWINYL 63
                     79******************************887552..2.49*******97 PP

2Myb_DNA-binding57.72.6e-1869113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++
         EMT24564  69 RGNFTDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 113
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.772963IPR017930Myb domain
SuperFamilySSF466897.91E-2613110IPR009057Homeodomain-like
SMARTSM007175.7E-81365IPR001005SANT/Myb domain
PfamPF002498.2E-91463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-181570IPR009057Homeodomain-like
CDDcd001674.73E-81663No hitNo description
PROSITE profilePS5129427.52864118IPR017930Myb domain
SMARTSM007171.6E-1768116IPR001005SANT/Myb domain
PfamPF002493.2E-1669113IPR001005SANT/Myb domain
CDDcd001671.41E-1371114No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2871118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRSACCEKA HTNKGAWTKE EDQRLIAHIK AHGEGCWRSL PKAAGTTYSY LYLSCRLRWI  60
NYLRPDLKRG NFTDEEDELI IKLHEFLGNK WSLIAGRLPG RTDNEIKNYW NTHVKRKLLA  120
RGVDPQTHRP LNAGTAAVQG MHTPSSPVVA SGASPHQLAG GSSCSPDASG HSSDADDSVS  180
LPPSLAGNLG VGMIDLNLSI SPPCEPPLSR EADAMPIIKE SKPRFSAFQK LSRCLSHQSM  240
NVYAAISPGP SKDIKGLAVT LHSGKGVDSS IDQRRNVLGQ KTRDPSIPPE KNFVTFSHRG  300
ADQAIKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271311826128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2261400.0KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201126.11e-147myb-related protein 308-like
SwissprotP813932e-80MYB08_ANTMA; Myb-related protein 308
TrEMBLM8BRD90.0M8BRD9_AEGTA; Myb-related protein 308
STRINGEMT245640.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-79myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]