PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24550
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 531aa    MW: 56091.1 Da    PI: 8.0096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24550genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076126148123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               +kC +C+k++  +s+ k H + +
  EMT24550 126 WKCDKCSKRYAVQSDWKAHSKIC 148
               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-4114147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGMRDGD QQDQMKPLIS QQQQQHQQQL AAAALAARGS AAPDPDAEVI  60
ALSPKTLMAT NRFVCELKQK NPNQVQRRRV YLCPEPTCVH HDPSRALGDL TGIKKHGCRK  120
HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAQE  180
SARLPPTSLS SLTSHLYGAT NAGNMALSLS QVGSHLNSTL QHDGHHHHPS PELLRLGGAA  240
GGGSSSIAAR LDHLLSPSGA SAFRPPQQQP QSAFFLNAAP GQDFGDEAGN GSHSYLQSKP  300
FHGLMQLPDL QGNGAGGPAS SGHGLFNLGF FSNNGNSSGS SHEHASQGMM SNDQFSGGAG  360
GGGGGGSEVS AAAIFGGNFV GGDHISQAGM YNDQAPMLPQ MSATALLQKA AQMGATSSPN  420
GAASMFRGFV GSSPHARQGT PQQQMDQNDA NLNELMNSLA AGGGVNAAGR RHRARDIDTE  480
RRPPPEQQRH ELLGGRDEVG FVLQRRPDAM IDGSIKLTQP VSSDLSSESE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34122188369Zinc finger protein JACKDAW
5b3h_F2e-34122188369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355366SGGAGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197691.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197692.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197693.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLM8BHS80.0M8BHS8_AEGTA; Zinc finger protein MAGPIE
STRINGEMT245500.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-76indeterminate(ID)-domain 2