PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24518
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 99aa    MW: 11120.3 Da    PI: 11.9666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24518genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171260249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
              rie+ ++r + f kRr+g+ KKAeEL vLCda+v ++++ + +g+++ +
  EMT24518 12 RIEDRRRRGICFRKRRAGLVKKAEELAVLCDADVGLLVINPfDGTFQRF 60
              8*********************************999987646777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-18363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.212351IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-18459IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-15525IPR002100Transcription factor, MADS-box
PfamPF003199.7E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MARQRGRVVL RRIEDRRRRG ICFRKRRAGL VKKAEELAVL CDADVGLLVI NPFDGTFQRF  60
AAPATRKQYM VPGSISGVRS IVLLLLKGIQ SPLKLVISC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693474e-58KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147558.12e-39MADS-box transcription factor 51-like isoform X1
SwissprotQ9XJ615e-15MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLM8BRT06e-63M8BRT0_AEGTA; Agamous-like MADS-box protein AGL21
STRINGEMT245181e-63(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]