PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24478
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family LSD
Protein Properties Length: 146aa    MW: 14992.5 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24478genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.13.3e-143054125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              C+gCr+lL+YP+GA+sV+Ca+C tV
  EMT24478 30 CSGCRNLLMYPAGATSVCCAVCSTV 54
              ***********************99 PP

2zf-LSD146.84.9e-156993125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              CggC+tlL+Y rGA+sV+C++C+tV
  EMT24478 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
              ************************9 PP

3zf-LSD138.32.2e-12107131125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               Cg+Cr lL+Y +GA+sV+Ca+C +V
  EMT24478 107 CGSCRMLLMYQYGARSVKCAVCSFV 131
               **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-132757IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.8E-156695IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-12104133IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-11107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPAP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGSC RMLLMYQYGA  120
RSVKCAVCSF VTSVGASSGA EQKPSN
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5533270.0EF553327.1 Triticum aestivum LSD1-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187808.11e-100protein LSD1
SwissprotQ0J7V92e-81LSD1_ORYSJ; Protein LSD1
TrEMBLA0A287G7I95e-99A0A287G7I9_HORVV; Uncharacterized protein
TrEMBLA0A446J4D23e-99A0A446J4D2_TRITD; Uncharacterized protein
TrEMBLA0A452Z8963e-99A0A452Z896_AEGTS; Uncharacterized protein
TrEMBLA5HSI23e-99A5HSI2_WHEAT; LSD1-type zinc finger protein
TrEMBLM8BRP43e-99M8BRP4_AEGTA; Uncharacterized protein
STRINGEMT244781e-100(Aegilops tauschii)
STRINGTraes_1AL_4B7636BC9.11e-100(Triticum aestivum)
STRINGTraes_1DL_263F80870.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-59lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]