PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24019
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRF
Protein Properties Length: 338aa    MW: 37836.3 Da    PI: 8.8861
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC741.6e-2361105145
       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
               d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+
  EMT24019  61 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 105
               79****************************************997 PP
2QLQ57.15.5e-20237237
       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
              +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  EMT24019  2 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 37
              8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-11137IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.762237IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-14235IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.15161105IPR014977WRC domain
PfamPF088791.2E-1962104IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPFTPSQWME LEHQALIYKY LNAKAPIPSS LLISISKSFR PSSDRMPWRP VYQGFTNADS  60
DPEPGRCRRT DGKKWRCSKE AMAEHKYCER HINRNRHRSR KPVENQTRKN AKETPAAGSL  120
SAAVSQGGCK KAKAGDELKP GSVSYWTDNL NRAMVSKARG NNPEEGNSAP LLNSTNQQHT  180
LSLFSQLKQQ SKPDKFSPAV DSESISSNTV LKPWERSNQQ SSKDVSSTTL HDRGCLQSVL  240
QDFSMHKNDK IEAQKNNASV PSTFYSPTEG RHISCLASNM MQVQEDCISS SWEIPQGGPL  300
GEILTNSKNT DDLTNKCESR SYGWLLSLDE HEMTGLIQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196595.10.0growth-regulating factor 9-like
SwissprotQ9FRG81e-172GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLM8BPX30.0M8BPX3_AEGTA; Uncharacterized protein
STRINGEMT240190.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-38growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]