PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT23972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11103.2 Da PI: 5.7154 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.4e-08 | 4 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + da +++ ++ +W +ar++g g++ +++k ++ EMT23972 4 SWTFKQNKVFEDALAKYDKDapdRWQNVAREVGDGKSVEDVKKHF 48 7*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.706 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-5 | 1 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.93E-10 | 3 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-5 | 4 | 48 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MSSSWTFKQN KVFEDALAKY DKDAPDRWQN VAREVGDGKS VEDVKKHFAE LEKDVDEIHT 60 NGAGSSSNNT KGGSSRGGSS DGQRYLCSLA NVVALTPLPL LGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-16 | 5 | 85 | 11 | 87 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951921 | 3e-90 | JF951921.1 Aegilops speltoides clone TaMYB38 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167022.1 | 1e-55 | protein RADIALIS-like 4 isoform X1 | ||||
TrEMBL | M8CA77 | 6e-70 | M8CA77_AEGTA; Uncharacterized protein | ||||
STRING | EMT23972 | 9e-71 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 4e-20 | RAD-like 6 |