PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23677
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 657aa    MW: 73714.4 Da    PI: 6.8445
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23677genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.65.7e-1112856552374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL++cA+a + +d++   +lL++++ ++sp+gd+ qRla+y++++L+arla+++s++y++l +++ts   s++ l+++kl+  ++P++++s +  N+aI
  EMT23677 285 TTLLIHCAQAAAIDDHRGSGELLKQIRRHSSPHGDAGQRLAHYIANGLEARLAGTGSTVYRSLVARRTS---SADMLKIFKLYGTACPFIRMSRFYSNEAI 382
               689****************************************************************99...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               l+a++g + vHi+D++i  G+QWp +lq +++R++gpp++RiTg++ p++g   +e+le+tg+rL+++A+ ++vpfe+++ +a +++++++e+Lr+++++ 
  EMT23677 383 LDATKGVTSVHILDYGIDWGFQWPVFLQRISKRDGGPPRVRITGIDLPQPGfrPAERLEATGRRLSEYAKMFHVPFEYRA-IAAKWDAIRVEDLRIDKDDL 482
               **************************************************9*****************************.799***************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               l+Vn+ +++ +++de+v+ es+r++vL+++++++P+ ++++  +  +n++ F++rf eal y+s+l+d+lea++p+ +e+r+ +Ere++gre+ nvvaceg
  EMT23677 483 LIVNCLFRMRHMMDETVTDESPRKTVLNTIRKMNPHRFIHAVVNGTYNAPFFVTRFKEALFYFSSLYDMLEATAPPVDEHRQLIEREYFGRELLNVVACEG 583
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +er+er et+++W+ r  +aGF++vpl ++ +k+a++ + k + + + v+e+++++++gWk+r + ++S W+
  EMT23677 584 TERVERPETYKQWQVRNLRAGFRQVPLLQESVKKARYKVTKSYHRDFFVDEDNKWMLQGWKGRVIGALSTWK 655
               *******************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.19258635IPR005202Transcription factor GRAS
PfamPF035142.0E-108285655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MGSCEDVEYG DVFSVPNPAA APAYALDFSL HHHHQHHQQQ LRFPPSPYGF HGLPAGPAAH  60
YQPSPPQSAL IGSTPSPVST TTELGSPEEA SDDAVLAYIN QFLLEDDDDE FFAPDAAAAT  120
APARDSALLA VAKPFVDIIA DAKPAYQHSS WMDPCCAFAG MGGGSPDMFI SSSRQSSCQL  180
VPCDSVKVEE ECAVHKGRKN RHGDDDLEPE DERRRKQLAL SEEETVREMF DKVLLCNGVN  240
CILQSPLPAE AEISSVYVKG SGNRRGRKKG KTGVPTVEEE SVDLTTLLIH CAQAAAIDDH  300
RGSGELLKQI RRHSSPHGDA GQRLAHYIAN GLEARLAGTG STVYRSLVAR RTSSADMLKI  360
FKLYGTACPF IRMSRFYSNE AILDATKGVT SVHILDYGID WGFQWPVFLQ RISKRDGGPP  420
RVRITGIDLP QPGFRPAERL EATGRRLSEY AKMFHVPFEY RAIAAKWDAI RVEDLRIDKD  480
DLLIVNCLFR MRHMMDETVT DESPRKTVLN TIRKMNPHRF IHAVVNGTYN APFFVTRFKE  540
ALFYFSSLYD MLEATAPPVD EHRQLIEREY FGRELLNVVA CEGTERVERP ETYKQWQVRN  600
LRAGFRQVPL LQESVKKARY KVTKSYHRDF FVDEDNKWML QGWKGRVIGA LSTWKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4927865613380Protein SCARECROW
5b3h_A5e-4927865612379Protein SCARECROW
5b3h_D5e-4927865612379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507920.0AK250792.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf94i06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179545.10.0scarecrow-like protein 9
SwissprotQ9XE581e-163SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A453MA150.0A0A453MA15_AEGTS; Uncharacterized protein
TrEMBLM8C9D60.0M8C9D6_AEGTA; Uncharacterized protein
STRINGEMT236770.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-163GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]