PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT23464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HB-other | ||||||||
Protein Properties | Length: 228aa MW: 26648 Da PI: 7.3069 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.7 | 1.9e-13 | 103 | 138 | 18 | 53 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +F+ ++yp+++ r++L+++lg++ +qVk+WFqN+R+ EMT23464 103 VFRDCPYPNEKLRKDLSERLGMSAQQVKFWFQNKRT 138 699********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-15 | 55 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-11 | 58 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.3E-7 | 70 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-10 | 72 | 137 | No hit | No description |
Pfam | PF00046 | 6.2E-11 | 103 | 138 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.6 | 104 | 143 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDGDNSGVHN EFDLFMTSTH NHLLQHNHSD EMDDLLGAST IVGNTDDANV VVADHDNNDG 60 ETHSEQRMAT RRAKYHRLRS EQIQQLEAYN TYSINVSYLA KIVFRDCPYP NEKLRKDLSE 120 RLGMSAQQVK FWFQNKRTFN KGKMQRWETQ NCWVENEKLK TERQAIMLAM QNKTCLKCRG 180 VMVQTQHTLE FQCLYTENMR LKEELLHATA YLKEGLRRNG MSLPSARD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 7e-99 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153975.1 | 1e-138 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
TrEMBL | M8BND5 | 1e-172 | M8BND5_AEGTA; Homeobox-leucine zipper protein ROC4 | ||||
STRING | EMT23464 | 1e-173 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16772 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 5e-26 | HD-ZIP family protein |