PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT23460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 24383.4 Da PI: 9.9876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ede l+ +vk +G g+W+ ++++ g++R++k+c++rw++yl EMT23460 8 RGAWTGKEDETLASYVKAHGEGRWNEVPQRAGLRRCGKSCRLRWLNYL 55 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++ +v+++++lG++ W++Ia +++ gRt++++k++w++ EMT23460 61 RGNISNDEEDTIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNST 105 78899*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.781 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-28 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-23 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 23.776 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.28E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MATEGVKRGA WTGKEDETLA SYVKAHGEGR WNEVPQRAGL RRCGKSCRLR WLNYLRPNIK 60 RGNISNDEED TIVRLHALLG NRWSLIAGRL PGRTDNEIKN YWNSTLGRKV LPAPHSATRM 120 VATPDTSAGS GSYTEASASL SSSGPGTSDK AATPSPLPAT LWAPKPVRHT GHPFFLRDRP 180 PPLPVAETRT VANGDACSGS SSVTSEFPAV PPSLGSDDWM HEKTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 8 | 110 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB252146 | 1e-108 | AB252146.1 Triticum aestivum Tamyb3 mRNA for myb-related protein, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154992.1 | 1e-162 | transcription factor MYB114-like | ||||
Swissprot | P10290 | 3e-70 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | M8BEU8 | 1e-163 | M8BEU8_AEGTA; Uncharacterized protein | ||||
STRING | EMT23460 | 1e-164 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-55 | myb domain protein 5 |