PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT23454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 176aa MW: 20299 Da PI: 6.1392 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.4 | 3.2e-10 | 102 | 137 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ EMT23454 102 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 137 5679*****************************985 PP | |||||||
2 | ELK | 39.1 | 1.6e-13 | 57 | 78 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLl+KYsgyL+sL+qEFs EMT23454 57 ELKYQLLKKYSGYLSSLRQEFS 78 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 1.2E-7 | 57 | 78 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.627 | 57 | 77 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.7E-10 | 57 | 78 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.892 | 77 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-20 | 78 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.4E-13 | 79 | 144 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 82 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.06E-13 | 89 | 141 | No hit | No description |
Pfam | PF05920 | 3.4E-17 | 97 | 136 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MGFLNTATTP LLSDMVETES LKPDGKCEGA GSSEDEMDAS GRENEPPEID PRAEDKELKY 60 QLLKKYSGYL SSLRQEFSKK KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKIALAESTG 120 LDQKQINNWF INQRKRHWKP SEDMPFVMME GFHPQNAAAL YMDGQFMADG MYSLGS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF544045 | 0.0 | AF544045.1 Hordeum vulgare knotted 1 (kn1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180358.1 | 1e-110 | homeobox protein knotted-1-like 12 | ||||
Swissprot | O65034 | 1e-95 | KNOSC_ORYSI; Homeobox protein knotted-1-like 12 | ||||
Swissprot | O80416 | 1e-95 | KNOSC_ORYSJ; Homeobox protein knotted-1-like 12 | ||||
TrEMBL | M8BNC5 | 1e-128 | M8BNC5_AEGTA; Homeobox protein knotted-1-like 12 | ||||
STRING | EMT23454 | 1e-128 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-60 | KNOTTED-like from Arabidopsis thaliana |