PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23454
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TALE
Protein Properties Length: 176aa    MW: 20299 Da    PI: 6.1392
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23454genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.2e-101021372055
               HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  EMT23454 102 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 137
               5679*****************************985 PP

2ELK39.11.6e-135778122
       ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
              ELK qLl+KYsgyL+sL+qEFs
  EMT23454 57 ELKYQLLKKYSGYLSSLRQEFS 78
              9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.2E-75778IPR005539ELK domain
PROSITE profilePS5121311.6275777IPR005539ELK domain
PfamPF037891.7E-105778IPR005539ELK domain
PROSITE profilePS5007112.89277140IPR001356Homeobox domain
SuperFamilySSF466893.08E-2078152IPR009057Homeodomain-like
SMARTSM003894.4E-1379144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2882141IPR009057Homeodomain-like
CDDcd000864.06E-1389141No hitNo description
PfamPF059203.4E-1797136IPR008422Homeobox KN domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGFLNTATTP LLSDMVETES LKPDGKCEGA GSSEDEMDAS GRENEPPEID PRAEDKELKY  60
QLLKKYSGYL SSLRQEFSKK KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKIALAESTG  120
LDQKQINNWF INQRKRHWKP SEDMPFVMME GFHPQNAAAL YMDGQFMADG MYSLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440450.0AF544045.1 Hordeum vulgare knotted 1 (kn1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180358.11e-110homeobox protein knotted-1-like 12
SwissprotO650341e-95KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-95KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLM8BNC51e-128M8BNC5_AEGTA; Homeobox protein knotted-1-like 12
STRINGEMT234541e-128(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-60KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]