PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT23269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 32869.7 Da PI: 5.5768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ + +G+g+W++++++ g++R++k+c++r+ +yl EMT23269 14 KGPWTAEEDAKLLAYTSNHGTGNWTSVPQRAGLKRCGKSCRLRYTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++ EMT23269 69 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110 89******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.055 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.003 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-12 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 3.5E-15 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS NHGTGNWTSV PQRAGLKRCG KSCRLRYTNY 60 LRPNLKHENF TQEEEELIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG 120 IDPITHRPIA DLMQSIGTLA IRPPPSAAGA SSSSYLPVNP PAAPGLQPLH DDVKYHTVLN 180 QQQQQVITLL DPDAPGAAAS PEHQLKWSDF LADDAAALEA APQVVLGQYQ EAAVAGGGAH 240 AYGDTDSTAA DGVGGGGDDS AASAFIDAML DSDKKMGVDQ LIADLLADPA YYYGGGSSSS 300 TSELGWGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372736 | 0.0 | AK372736.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201589.1 | 0.0 | myb-related protein Zm38-like | ||||
TrEMBL | A0A3B6JJS6 | 0.0 | A0A3B6JJS6_WHEAT; Uncharacterized protein | ||||
TrEMBL | M8BMX8 | 0.0 | M8BMX8_AEGTA; Transcription repressor MYB4 | ||||
STRING | EMT23269 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_4DL_DFCF4A15A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 5e-66 | myb domain protein 103 |