PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23019
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TCP
Protein Properties Length: 371aa    MW: 38675.8 Da    PI: 6.0957
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP34.66.6e-113110518104
       TCP  18 RdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssasnsssgkaaksaakskksqks 103
               R RR R s +c       qd+LG+d++sk+++WL+++ak  ++ l+ +                ++++s+++++s  +s++                    
  EMT23019  31 RRRRKRSSTTC-------QDRLGYDRPSKAVDWLIKNAKDPVDTLATLpawqptavapassnaAAPPSSSTQPDSADNSDD-------------------- 104
               55666666666.......799***************************555555444333322222222222222222221.................... PP

       TCP 104 a 104
               +
  EMT23019 105 Q 105
               1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-74293IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDAHWSSSSS GGEAADGGSG SEAPPPGSSR RRRRKRSSTT CQDRLGYDRP SKAVDWLIKN  60
AKDPVDTLAT LPAWQPTAVA PASSNAAAPP SSSTQPDSAD NSDDQAQAIT IAHSSFDFAG  120
SGGAGGATGG ISFLPPSLDS DSIADTIKSF FPMGGTAGGE PSSSTVAAHS SAMGFQGYTP  180
DLLSRTGSQS QELRLSLQPL PDPMFHHHHH QQEQHRPDGH DGNGTAQQTL FPGAASYSFG  240
GGGAMWAEQA ASQRMMPWNV PDPGGGSTGG YLFNVSQQAA HMQAALSGQS QFFFQRGPLQ  300
SSNQPSDRGW PETVEADDNN PMQQQQQHQG GLNPSVSAIG FGPGVSFSGF RVPARMQGNE  360
EHNGGKSAPH H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935RRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766410.0AK376641.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129N09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175459.10.0transcription factor PCF5-like
RefseqXP_020175460.10.0transcription factor PCF5-like
SwissprotQ8LT071e-127PCF5_ORYSJ; Transcription factor PCF5
TrEMBLM8BM450.0M8BM45_AEGTA; Uncharacterized protein
STRINGEMT230190.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-24TCP family protein