PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HB-other | ||||||||
Protein Properties | Length: 1822aa MW: 201370 Da PI: 5.2458 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.6 | 6.5e-11 | 36 | 78 | 3 | 45 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 +R t++qle+Le+ + ++yp++++r eL++klgLt+rq + EMT22966 36 RRVMKTPYQLEVLEQTYTDDPYPNEAKRVELSAKLGLTDRQLQ 78 69999************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-10 | 14 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-11 | 19 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.588 | 31 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-4 | 33 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.46E-9 | 36 | 78 | No hit | No description |
Pfam | PF00046 | 1.7E-8 | 36 | 78 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 15.187 | 523 | 582 | IPR018501 | DDT domain |
SMART | SM00571 | 1.7E-14 | 523 | 582 | IPR018501 | DDT domain |
Pfam | PF02791 | 6.7E-15 | 525 | 579 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.7E-15 | 746 | 813 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.0E-9 | 957 | 999 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 4.0E-13 | 1136 | 1207 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1822 aa Download sequence Send to blast |
MDSSGDGGDE GAPASSSAPS AGPGGASGSS GKPTARRVMK TPYQLEVLEQ TYTDDPYPNE 60 AKRVELSAKL GLTDRQLQMC SRRGPGRSSA VPRISAPEVD RRYYEAHPVM LPPQAPVQLT 120 RAAHRAIETV QQLIGEPLRE DGPVLGDHFD PLPPGAFGAP MPVVPEQRKQ PYRSHETSVF 180 SAHDPKPMKA SAFLPSIDPS VSSTVTGKRK YMSGNSSHLP SRAVHEYQFL PEHTSDIYER 240 TSQSCFYDAS AEASNSRISS LSTGSRLVHG AEKASSYAFD GQVSGSSHLN QHGKPLISLS 300 GSTDYEMASN IDVSPAPIEG QFGIPQVAGL QNPLASAEGV DYHDDAYRLD RKRKHNEESK 360 IAKEVDAEEK RIRKELEKQD VLKKKREEQM RKEVERYDRE RKKEEERFMR EKQREEERLQ 420 KEQWREQKRM EKFLVKQSLR AEKLKQKEEL RKEKEAARQK AANERATARR IAREYMELME 480 DERMLTQFPT EAFYPCAGML TQFPTEAVRL KVPFSIKPWT SSESNIGNLL MVWKFFFTFA 540 DVLELPSFTL DEFVQSLHDY DSRLLGELHV AVLKSIIKDI EDVARTSSVV SGVNQSSSAN 600 PGGGHPQIVE GAYAWGFNIL TWQRHLTYLT WPEILRQFGL SAGFGPQLKK RTEDVYHDDN 660 EVLTFESFQY TYDISLTATP SVPQYMGRRE YIVGQSIYGP SYKKGRNSAD VISTLRNGSA 720 AVKSAALMKE RGYTNRRRSR HRLTPGTVKF AAFHVLSLEG DEGLSILEVA EKIQRSGLRD 780 LTTSKTPEAS ISAALSRDTK LFERTAPSTY CVKTPYRKDP ADSEAVFSEA REKIRVFQNA 840 LSGCEEVEKD VEDAERGDDD SECDEADDDP DGDEVNIEEK DVNASVARAK DAGLPIAAGD 900 INDEVKGVIN PSMPSSPHSK SPSGLQRMVD KSTAVSTSSD PPIGASQDAE IDESNQGESW 960 VQGLAEGDYC DLSVEERLNA LVALIGVATE GNSMRAILEE RLEAANALKK QMWAESQLDR 1020 RRSREEFAGR MQHDPCTDLK ADVDQGNNVG ECTLTPVHNL IKENGGKASS VNNDLLVDQQ 1080 CQLNAGNMVH EGNGVSRISN ANPESLSAQQ YASSEKTRSQ LKSFIGHKAE QLYVYRSLPL 1140 GQDRRRNRYW QFSTSVSSND PGSGRIFFES RDGYWRLIDS AEAFDALVAS LDTRGIRESH 1200 LHSMLQSIES TFKDAIGWIK CATIEHSAGR NLRNGSSEII SPNHSNEFGS PCSTLSGVVS 1260 DTGVAYSDSF KIELGRNDLE KVAISKRACM FLKWMWEGNN HQSTCAMKYG KKRCSDLIHG 1320 CDYCYQIYLA EETHCSSCHK TFKSIHSLSE HTSQCEEKRR TDPNWKIQIS DDSVPIRPRL 1380 LKLLLATVEA SVPAEALQPF WTDGYRKSWG VKLFSTSSNE EIFQLLTVLE GALKRDYLSS 1440 NFETTAELLN SNTLDFAGRN SIACSGSAAV LPWVPSTAAA VTLRLLDLDS SLSYTLDQKA 1500 GLNKEREAGD FIKGPSRYTA VKNKQEMGLV GAPGFDHHVG AQLTPSNGLR GRGRGGRGRG 1560 RGGRSLSRGG RVPRGVGSSP RIEFRDDNNV SYKETTDKQA GRGRGRGRGR GRGRGRGRGR 1620 GSITVSGSGS GSVRGRGRGR GRGLRTVRPR QPVELGARSI PKANLLGTFG MLSNAKPMTL 1680 HSPQSSGAEE WGLDRRAYAE DDEDNSVSQS DESEGDEENG EPMNEDYDEQ LPDYSRDNSG 1740 SSPRQMMDSE SEDNDEYDEE GEEDGADYDA EQPMDEDNDD AEMSGDDELG DDGDDDDGGG 1800 SQVGAGNADD DDATSYSSEY SE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1609 | 1619 | RGRGRGRGRGR |
2 | 1633 | 1642 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162194.1 | 0.0 | homeobox-DDT domain protein RLT2-like | ||||
TrEMBL | M8CI71 | 0.0 | M8CI71_AEGTA; Uncharacterized protein | ||||
STRING | EMT22966 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |