PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22736
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 217aa    MW: 24860.3 Da    PI: 10.236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22736genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt+Ed+ll+d v+q+G g+W+++++  g++R++k+c++rw +yl
         EMT22736 21 KGPWTTQEDKLLLDHVAQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 68
                     79********************************************97 PP
2Myb_DNA-binding54.42.8e-1774118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+  +v+++ ++G++ W+tIar ++ gRt++++k++w+++
         EMT22736  74 RGKMTPQEESTIVQLHSLWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                      89********************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5681668IPR017930Myb domain
SuperFamilySSF466891.72E-2919115IPR009057Homeodomain-like
SMARTSM007179.4E-162070IPR001005SANT/Myb domain
PfamPF002491.1E-172168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-232275IPR009057Homeodomain-like
CDDcd001671.52E-112368No hitNo description
PROSITE profilePS5129424.69669123IPR017930Myb domain
SMARTSM007172.0E-1573121IPR001005SANT/Myb domain
PfamPF002495.4E-1574118IPR001005SANT/Myb domain
CDDcd001674.11E-1076118No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2376121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAEAEGQLAA CWGKQDDEWR KGPWTTQEDK LLLDHVAQHG EGRWNSVSKL TGLKRSGKSC  60
RLRWVNYLRP DLKRGKMTPQ EESTIVQLHS LWGNRWSTIA RSLPGRTDNE IKNYWRTHYK  120
KGKPSKNIER ARARFLMQRR EMQQQQQQKL LLGQGKDVEL PGATVSDDLG GTMERARETE  180
DVFSLVGTDE ALFLPSAYSN IRDKGVLKLV SVLILTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262111727122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-118AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160476.11e-110transcription factor MYB3-like
SwissprotQ9C9G72e-50MYB62_ARATH; Transcription factor MYB62
TrEMBLM8CHM01e-159M8CHM0_AEGTA; Myb-related protein 305
STRINGEMT227361e-159(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.15e-63myb domain protein 79
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]