PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 39115 Da PI: 6.5035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.7e-07 | 159 | 180 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H EMT22696 159 FCNICGKGFRRDANLRMHMRAH 180 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.24E-6 | 155 | 180 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 158 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 158 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.9E-6 | 160 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 160 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 206 | 239 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 26 | 244 | 267 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDSTTNQFAG AAAGASSANT APLPAMLADA LIGAGAGGGD GDPSAALQRL AALGDRMAAV 60 RRLLVASISG ESQPLSSSDI QSVSSEISSA AHLVVLNAAS LLSSSLPFPA PSATPAPPAP 120 IQELPAAAST ADVLPQEATK GYDVVELDAD ELLAEHVHFC NICGKGFRRD ANLRMHMRAH 180 GDRFKTLDAL SRPGQAKPAD GRDVRFSCPF TGCNRNRAHR RFRPLQSAVC ARNHFRRSHC 240 PKLYACERCG GKKRFAVLAD LRGHLRHCGE EAQWRCSCGT TFSRKDKLFG HLALFEGHMP 300 AMSPPNKDAV TTTTEAPLDI MDEGGIEEQE DGGEGGFDPE FFKEWMEELK DDGVPAGGTV 360 WPGRAAAGQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175848.1 | 0.0 | zinc finger protein STAR3-like | ||||
Refseq | XP_020175849.1 | 0.0 | zinc finger protein STAR3-like | ||||
TrEMBL | M8CHI0 | 0.0 | M8CHI0_AEGTA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | EMT22696 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 8e-68 | C2H2 family protein |