PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22525
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 625aa    MW: 68097.9 Da    PI: 8.9622
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22525genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-2360159399
               EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ +el+v++
  EMT22525  60 KTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTEHGELCVGI 156
               89**************************996555555..8999*********************************************..55999****** PP

               E-S CS
        B3  97 frk 99 
               +r+
  EMT22525 157 RRA 159
               *97 PP
2Auxin_resp118.84.3e-39215298183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Prast+eFvvk++ +++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
    EMT22525 215 AATLAANSQPFEVVYYPRASTPEFVVKAAAMQAAMRIHWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPNSPWRLLQ 298
                 68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-2850162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-3557161IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36558160IPR003340B3 DNA binding domain
SMARTSM010195.3E-1958160IPR003340B3 DNA binding domain
PfamPF023622.4E-2160159IPR003340B3 DNA binding domain
CDDcd100173.06E-2060158No hitNo description
PfamPF065072.9E-33215298IPR010525Auxin response factor
PROSITE profilePS5174518.816530610IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MTENAQQCFP EGRCPGPARR LLTSKSQPSL KIDVTFKCSP NLAIPFLQVP ARAKRASRAK  60
TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIYRGTPRR  120
HLLTTGWSTF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVTCGGMECI SGWNAPGYGG  180
FSAFLKDEEN KMMNGGPAGY VKGRGKVKIA DVAEAATLAA NSQPFEVVYY PRASTPEFVV  240
KAAAMQAAMR IHWCPGMRFK MAFETEDSSR ISWFMGTISS VQVADPLRWP NSPWRLLQVT  300
WDEPDLLQNV KCVSPWLVEL VSSIPPIHLG PFSPPRKKLR VPQHPDFPLD GHLFNPIFHG  360
NPLGPSNSPL CCYSDNNSPA GIQGARHAQF GLPLTDHQLN KLHLGLFHGG GFNRLDALTP  420
SSRIPKGFVL SSAPAHDSVS CLLTIGTPQS TEKSVDRKTP HIMLFGKAIL TEQQMTSSGS  480
RETLSSGATG NSSPISTGLK AGNASDGSGS SICIGFSSQG HEASDLGLEA GHCKVFMESE  540
DVGRTIDLSV FGSYDELYGR LADMFGIEKE EIISHLRYRD TAGAVMHTGG LPFSDFMKVA  600
RRLTIISGEK GGLAKPLIEC MVQRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-5860323160392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635000.0AK363500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172888.10.0auxin response factor 22-like
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLM8BC980.0M8BC98_AEGTA; Auxin response factor
STRINGEMT225250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]