PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Dof | ||||||||
Protein Properties | Length: 354aa MW: 38260.7 Da PI: 8.3201 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.2e-40 | 120 | 179 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ EMT22446 120 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSL 179 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 116 | 177 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.0E-32 | 122 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 124 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 126 | 162 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGQLRPAAGG GGDCLIKLFG KTIPVPDAGA GANAGDVDKD LGNFGRFTEP MGKKDLQHRG 60 GSTTAELKVQ EIAPQDSTGS PQQPEVVDVE DPSAAKNSVA DQQDEEQGDT ANQKEKLKKP 120 DKILPCPRCS SMDTKFCYYN NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSLS 180 AASHFLQRIR AALPGDPLCT PVNTNGTVLS FGSDASTLDV SEQMKHIKEL ASVTRTENTD 240 APSVGSSAEG CFQSRKHPRD GDEERDTKGN GKVWVPKTIR IDDVDEVARS SIWSLIGIKG 300 DKVEKDDGKG CKLARVFDPK DEAKTSSHRG NNSLPFLKGN PAALSRSVNF QERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252924 | 0.0 | AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166390.1 | 1e-166 | cyclic dof factor 1-like | ||||
TrEMBL | M8CGW7 | 0.0 | M8CGW7_AEGTA; Dof zinc finger protein | ||||
STRING | EMT22446 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 4e-60 | cycling DOF factor 1 |