PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | CO-like | ||||||||
Protein Properties | Length: 427aa MW: 45966.2 Da PI: 4.9969 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.7e-07 | 129 | 166 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+++ ++l+C++++ +lC+ C H g H EMT22281 129 RPCDTCAVDAARLYCRSDGAYLCAGCDARAH-GagsrHA 166 68*****999******************999.4456675 PP | |||||||
2 | zf-B_box | 22.9 | 1.8e-07 | 168 | 212 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC++C +H+ H++ p EMT22281 168 VWLCEVCEHAPAAVTCRADAAALCATCDADIHSAnplasrHERLP 212 679*****************************6688888898876 PP | |||||||
3 | CCT | 68.5 | 1.8e-23 | 352 | 395 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ EMT22281 352 REARLMRYREKRKNRRFQKTIRYASRKAYAETRPRIKGRFAKRT 395 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.8E-4 | 126 | 170 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.22E-6 | 129 | 170 | No hit | No description |
Pfam | PF00643 | 3.5E-5 | 129 | 165 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.224 | 131 | 170 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.338 | 166 | 213 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 168 | 213 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.93E-8 | 169 | 213 | No hit | No description |
SMART | SM00336 | 2.0E-9 | 171 | 213 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.2E-17 | 352 | 394 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.777 | 352 | 394 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MTGEEEWLVQ DVMDSKREFK RSQEEQWEEL HEMMALSTAG DVYVPELDVK QEVKEEMMED 60 RLPTPTPQNP PAPAPRHRAP SRKKRTKSLS PALSSADLSA GDLRRARCKV EEQTVVGGGE 120 GGLWGLAGRP CDTCAVDAAR LYCRSDGAYL CAGCDARAHG AGSRHARVWL CEVCEHAPAA 180 VTCRADAAAL CATCDADIHS ANPLASRHER LPVTPFFGAL ADPPQPAPSP SSAAATQEDA 240 DDDGSNEAEA ASWLLPEPGD SPEDSTATFF PDSDAYLDLD FVRSMDGIKA IGVPVAPSEL 300 DVAGGALFYP EHSMNHSMST SEVAVVPDAL SAGGAPAPAP SVAVVASKGK EREARLMRYR 360 EKRKNRRFQK TIRYASRKAY AETRPRIKGR FAKRTAEDDA LERDGPFSPA SSAHLASDGD 420 YGVVPSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 84 | RHRAPSRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368809 | 0.0 | AK368809.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080E22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194140.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q940T9 | 7e-70 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q9SK53 | 6e-70 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | M8CGH5 | 0.0 | M8CGH5_AEGTA; Uncharacterized protein | ||||
STRING | EMT22281 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 3e-45 | CONSTANS-like 4 |
Publications ? help Back to Top | |||
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