PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28743.8 Da PI: 8.3579 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.8 | 3.9e-25 | 10 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ + rqv++skRr gi+KKA EL vLCda+vav+++sstgk + ++s EMT22250 10 KRIEDATSRQVSYSKRRSGIMKKARELAVLCDAQVAVVMLSSTGKHHHFCS 60 79*********************************************9986 PP | |||||||
2 | K-box | 86.4 | 6e-29 | 87 | 184 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yq+++g+sl+++++e++q+ l++Lk+ ++nL++e+R+++GedL+ L++keL+ Leq+++ +l+ +R++K++++++q+e +kk k +e k+L+++l EMT22250 87 YQQATGTSLWTEQYENMQRTLSRLKSINRNLRTEIRQRMGEDLDALEFKELRGLEQNVDAALEVVRQRKYHVITRQTEIYKKKVKHSEEVYKKLQQEL 184 89999******************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-32 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.65E-34 | 2 | 96 | No hit | No description |
PRINTS | PR00404 | 7.0E-22 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-27 | 5 | 110 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.156 | 5 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-22 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-22 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-22 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-20 | 98 | 184 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.194 | 100 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRLGKFEIK RIEDATSRQV SYSKRRSGIM KKARELAVLC DAQVAVVMLS STGKHHHFCS 60 DGAEYARNQL TPCICLAACI KGIFDRYQQA TGTSLWTEQY ENMQRTLSRL KSINRNLRTE 120 IRQRMGEDLD ALEFKELRGL EQNVDAALEV VRQRKYHVIT RQTEIYKKKV KHSEEVYKKL 180 QQELSMREDP AFGFMDNPAF GLMDNPVMGG WDGVAAVEMG GGGSEADMYA FHAVSSQLDL 240 HGMAYGRSDC PLFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502879 | 1e-138 | AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148658.1 | 1e-175 | MADS-box transcription factor 16-like | ||||
Swissprot | Q944S9 | 1e-105 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | M8BBM2 | 0.0 | M8BBM2_AEGTA; MADS-box transcription factor 16 | ||||
STRING | EMT22250 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-53 | MIKC_MADS family protein |