PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21860
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 555aa    MW: 61324.2 Da    PI: 6.3711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21860genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.95e-1321855541373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++P++kf+++ aN a
  EMT21860 185 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEACPYFKFGYMSANGA 282
               5799*****************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp++RiTg+++  s   +   l  +g+rL+++A  ++vpfef+  va + e++e  +L v pgE
  EMT21860 283 IAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPTVRITGIDDTVSAyaRGGGLDLVGRRLSHIAGLCKVPFEFHS-VAMAGEEVEEGHLGVVPGE 382
               ************************************************888899999************************.7999*************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               al Vn+ l+lh+++de+vs++++rd++L+lvk+l+P+v+++veqe+++n+++F +rf+e+leyy+a+f+s++ +lpr+++er+++E+++l+re+vn++ace
  EMT21860 383 ALTVNFTLELHHIPDETVSTANHRDRILRLVKGLRPRVLTLVEQESNTNTAPFPQRFAETLEYYTAIFESIDLTLPRDDRERVNMEQHCLAREVVNLIACE 483
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               gaer+erhe ++kW++rl+ aGF+p pls+ +++++++ll+ ++++ y++ e++g+l+lgWk++pLv+ SaW
  EMT21860 484 GAERVERHEVFGKWKARLTLAGFRPSPLSSLVNATISTLLQSYSEN-YKLAERDGALYLGWKSKPLVVSSAW 554
               ********************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.027159536IPR005202Transcription factor GRAS
PfamPF035141.7E-129185554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNMQRQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HHYSLKSHSS  60
DASYENQVAQ MKHTLDSSAA AGCMRHDSPS SHSFTPPSIG SGSGSPSSHD DSHSDSTNGS  120
PVSASCVTVT TEDPNDLKQK LKDLEAEMLG PDAETVNSLE SSVAKQLSLE PEKWAQMMDF  180
PRGDLKELLL ACARAVEEKN MYAVDVMVPE LRKMVSVSGT PLERLGAYMV EGLVARLASS  240
GHSIYKALRC KEPKSSDLLS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE DRIHIIDFHI  300
AQGAQWISLL QALAARPGGP PTVRITGIDD TVSAYARGGG LDLVGRRLSH IAGLCKVPFE  360
FHSVAMAGEE VEEGHLGVVP GEALTVNFTL ELHHIPDETV STANHRDRIL RLVKGLRPRV  420
LTLVEQESNT NTAPFPQRFA ETLEYYTAIF ESIDLTLPRD DRERVNMEQH CLAREVVNLI  480
ACEGAERVER HEVFGKWKAR LTLAGFRPSP LSSLVNATIS TLLQSYSENY KLAERDGALY  540
LGWKSKPLVV SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-631895558375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641790.0AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1D5V0L10.0A0A1D5V0L1_WHEAT; Uncharacterized protein
TrEMBLA0A453B7K00.0A0A453B7K0_AEGTS; Uncharacterized protein
TrEMBLM8BAJ00.0M8BAJ0_AEGTA; Uncharacterized protein
STRINGEMT218600.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]