PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19718.5 Da PI: 7.3707 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140 | 8.1e-44 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+C++dCv+apyfp e+p++fa vh++FGasnv+k+l++lp +r da+sslvyeA ar+rdPvyG++g i+ lqqq++ql+++la++++e EMT21459 12 PCASCKLLRRRCTRDCVFAPYFPPEDPHRFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARMRDPVYGCAGAISYLQQQVSQLQVQLAVAQAE 111 7***********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.53 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAGAQTGSSA TPCASCKLLR RRCTRDCVFA PYFPPEDPHR FATVHRVFGA SNVSKMLQEL 60 PAAQRADAVS SLVYEATARM RDPVYGCAGA ISYLQQQVSQ LQVQLAVAQA EILQRINHPS 120 PATAFHLQEL QQRQAQQQQQ MQMDDDDKAY SSLVMQNDLM STLLLQEACL KKESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 2 | 114 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 2 | 114 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 4e-90 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183946.1 | 1e-129 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 4e-63 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A3B6MN87 | 1e-127 | A0A3B6MN87_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453KE84 | 1e-127 | A0A453KE84_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BHL5 | 1e-127 | M8BHL5_AEGTA; Uncharacterized protein | ||||
STRING | EMT21459 | 1e-128 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-53 | LBD family protein |
Publications ? help Back to Top | |||
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