PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | AP2 | ||||||||
Protein Properties | Length: 212aa MW: 22736.8 Da PI: 7.2197 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.3 | 3.4e-07 | 7 | 26 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrdp 22 +y+GVr+++ +g+Wv+eIr+p EMT21447 7 RYRGVRQRH-WGSWVSEIRHP 26 69******9.*********96 PP | |||||||
2 | AP2 | 35.4 | 2.7e-11 | 54 | 98 | 14 | 55 |
AP2 14 r.WvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 r W+ Ir + +g +++r++lg+f tae+Aa+a+++a++ + g EMT21447 54 RwWLTVIRTDGDdGGcRKTRIWLGTFETAEDAARAYDEAARIMCG 98 559999999445255677**********************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.09E-23 | 6 | 106 | No hit | No description |
PROSITE profile | PS51032 | 20.152 | 7 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-33 | 7 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 7 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-6 | 56 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-12 | 68 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 70 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLCV PTYLAMHACD FVDLSDALTV ILGRWWLTVI 60 RTDGDDGGCR KTRIWLGTFE TAEDAARAYD EAARIMCGQR ARTNFPAVAA AGSVSSSSSA 120 AVASSFLSAA LVAKLHRFNM ASVQAAHRQR EAAAAAASAA AATAAAMPPG GAHAGPTLPS 180 STGWVGTLLE EQHVEQMIAE LLDSDFSMEI CH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357202 | 1e-135 | AK357202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048C12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164328.1 | 1e-110 | ethylene-responsive transcription factor ERF003-like isoform X2 | ||||
TrEMBL | M8C2Z9 | 1e-152 | M8C2Z9_AEGTA; Ethylene-responsive transcription factor ERF003 | ||||
STRING | EMT21447 | 1e-153 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-22 | ERF family protein |