PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21389
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-other
Protein Properties Length: 148aa    MW: 15985.3 Da    PI: 8.9237
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21389genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.28.6e-06329329
              --SS--HHHHHHHHHHHHHSSS--HHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaee 29
              +Rt+++k+q  +Lee+F+ +++++ +e
  EMT21389  3 RRTKISKDQAAVLEECFKTHSTLNPTE 29
              7*****************988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF021832.4E-82860IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.3E-172869IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MWRRTKISKD QAAVLEECFK THSTLNPTEV DCEYMKRWCE QLAEQNRRLE KEVAELRALK  60
AAPPAHNGAS TGPLTTLTMC LSCKRVASTS SSSTCNVPSF SANAGIGMPM PSPVALPEQR  120
QFFCGFRDTG AAAYGGSAGL AKVVKAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669971e-116AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170044.14e-82homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9317e-30HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE57e-30HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLM8BHF51e-106M8BHF5_AEGTA; Uncharacterized protein
STRINGEMT213891e-107(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.15e-25homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]