PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21327
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 370aa    MW: 40088.8 Da    PI: 5.3129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21327genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-111459449
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +++  r  tfskRr g++K A  LS  + a+va+++  ++ k++ +
  EMT21327 14 DDDKERDFTFSKRRGGLFKIAADLSAVTRARVAIVVEKENEKMHSF 59
              78899***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035363IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-7362IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-14773IPR002100Transcription factor, MADS-box
PfamPF003192.9E-141459IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPKKDRRSAI TYVDDDKERD FTFSKRRGGL FKIAADLSAV TRARVAIVVE KENEKMHSFG  60
TPSADPIVDA FLAGAPLAIP LADEATTTRI AQLQSEVARL DMHCMIEFKE NQLSINHMKQ  120
ILEQHPGTVA NLIFSKEEEL GPEDLKDLSN EIYRVHEEIG HRLPPLHYGH KAMTSGASMI  180
QNVLPSSGPP SNHMKTVPSS GHSPWAHHLP QHQMPSSPLP PPPGQIVAPH FPQLPSMFHP  240
APSSSVPQIA SQLQTTSNQA LELPPPLDIS VDDYVSSSNP VNPQQNNANP NSTTGYNLVA  300
SPLLVNSGGN DLTANDPFGY ESWGYGLSDQ PFYNGFLEMG AYMGYNGADV GQSSVGNGGW  360
VDAPPESSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185126.11e-163pheromone receptor transcription factor-like
TrEMBLM8C2P10.0M8C2P1_AEGTA; Agamous-like MADS-box protein AGL17
STRINGEMT213270.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.13e-12AGAMOUS-like 17