PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21068
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YB
Protein Properties Length: 228aa    MW: 24991.8 Da    PI: 6.8882
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.37e-5615108194
     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
               vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yv+plk+yl+kyr++ 
  EMT21068  15 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVDPLKIYLQKYRDVI 108
               69*****************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5114106IPR009072Histone-fold
SuperFamilySSF471134.5E-3818107IPR009072Histone-fold
PfamPF008082.5E-282185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.9E-224967No hitNo description
PROSITE patternPS0068505268IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.9E-226886No hitNo description
PRINTSPR006156.9E-2287105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADDDSGSPR GGGGVREQDR FLPIANISRI MKKAVPANGK IAKDAKETLQ ECVSEFISFV  60
TSEASDKCQK EKRKTINGDD LLWAMATLGF EEYVDPLKIY LQKYRDVIMA LAHCQYLLQM  120
TIILLFCVII SPRFFSVFLA IFWTGAVIAD GGLDPAYLGH ITCVRSFELC PFNQGDSKLT  180
SKSGEGSVKK DIIGAHSGAT SSNAQAMVQH GAYAQGMGYM QPQWLSIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4616106393NF-YB
4awl_B3e-4616106494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4616106494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093931e-177BT009393.1 Triticum aestivum clone wlm96.pk037.k9:fis, full insert mRNA sequence.
GenBankKM0787411e-177KM078741.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182576.15e-73nuclear transcription factor Y subunit B-2-like
RefseqXP_020182577.15e-73nuclear transcription factor Y subunit B-2-like
SwissprotQ5QMG32e-64NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLM8BH401e-170M8BH40_AEGTA; Nuclear transcription factor Y subunit B-2
STRINGEMT210681e-170(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-59nuclear factor Y, subunit B10