PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21066
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 311aa    MW: 34108.6 Da    PI: 8.2617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21066genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-084302047
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47
                     G ++W+ Iar ++ gR++k+c++rw + 
         EMT21066  4 GARNWTMIARGIP-GRSGKSCRLRWCNQ 30
                     6789*********.***********985 PP

2Myb_DNA-binding46.67.6e-155796647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +eEd+ ++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
         EMT21066 57 EEEDQMIISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 96
                     7****************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.319131IPR017930Myb domain
CDDcd001673.21E-6429No hitNo description
SMARTSM0071774433IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-13442IPR009057Homeodomain-like
PfamPF139215.8E-7642No hitNo description
SuperFamilySSF466894.49E-2010101IPR009057Homeodomain-like
PROSITE profilePS5129419.29232101IPR017930Myb domain
SMARTSM007172.9E-95099IPR001005SANT/Myb domain
CDDcd001672.99E-115797No hitNo description
PfamPF002494.1E-135796IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-185798IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRDGARNWTM IARGIPGRSG KSCRLRWCNQ LDPQLKRKPF TAYLCYSLAK SDNLDAEEED  60
QMIISAHAIH GNKWASIAKL LVGRTDNAIK NHWNSTLRRR YCTGTRCTRS ASAEQPMREM  120
SRAVSEERWP LSGPSSFSVM EVKEAPVQTV SESSAGALQI RDINNCSTEA VDRSYPVRPV  180
ATIGAFRPYS LGPAQQMQME MSSSTKFVPT LQAVTPEIAV SKFADTTCFA ADVPNKCGHG  240
CCSTEEQPRN NSLLGPEFKE FIDHPPILSS SFASLVSEIS SIAWMNGGLQ SSNSGNLVQS  300
NPPAPDKLGM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28410326110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644270.0FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165805.10.0transcription factor MYB25-like
TrEMBLM8CD500.0M8CD50_AEGTA; Transcription factor MYB44
STRINGEMT210660.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-59myb domain protein 109