PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 34108.6 Da PI: 8.2617 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 4 | 30 | 20 | 47 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47 G ++W+ Iar ++ gR++k+c++rw + EMT21066 4 GARNWTMIARGIP-GRSGKSCRLRWCNQ 30 6789*********.***********985 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.6e-15 | 57 | 96 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eEd+ ++ a++ +G++ W++Ia+ + gRt++ +k++w++ EMT21066 57 EEEDQMIISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 96 7****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.319 | 1 | 31 | IPR017930 | Myb domain |
CDD | cd00167 | 3.21E-6 | 4 | 29 | No hit | No description |
SMART | SM00717 | 74 | 4 | 33 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-13 | 4 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.8E-7 | 6 | 42 | No hit | No description |
SuperFamily | SSF46689 | 4.49E-20 | 10 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.292 | 32 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-9 | 50 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-11 | 57 | 97 | No hit | No description |
Pfam | PF00249 | 4.1E-13 | 57 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 57 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRDGARNWTM IARGIPGRSG KSCRLRWCNQ LDPQLKRKPF TAYLCYSLAK SDNLDAEEED 60 QMIISAHAIH GNKWASIAKL LVGRTDNAIK NHWNSTLRRR YCTGTRCTRS ASAEQPMREM 120 SRAVSEERWP LSGPSSFSVM EVKEAPVQTV SESSAGALQI RDINNCSTEA VDRSYPVRPV 180 ATIGAFRPYS LGPAQQMQME MSSSTKFVPT LQAVTPEIAV SKFADTTCFA ADVPNKCGHG 240 CCSTEEQPRN NSLLGPEFKE FIDHPPILSS SFASLVSEIS SIAWMNGGLQ SSNSGNLVQS 300 NPPAPDKLGM V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 4 | 103 | 26 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564427 | 0.0 | FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165805.1 | 0.0 | transcription factor MYB25-like | ||||
TrEMBL | M8CD50 | 0.0 | M8CD50_AEGTA; Transcription factor MYB44 | ||||
STRING | EMT21066 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-59 | myb domain protein 109 |