PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT21053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 504aa MW: 56423.9 Da PI: 4.5471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.9 | 7.5e-27 | 143 | 271 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkdkevlskk 96 lp+G++F+P+d+el+ + L+k+ ++ + + +i+e+ + e k++ + +fF+++ k+y+tg+rk+r+++ + +W++tgk+k+v++ + EMT21053 143 LPKGVKFDPSDQELLGHLLAKHDRAGSQPH-PFIDEFIPTVEEADGV----KQDGSVSHFFHRTFKAYNTGTRKRRKINtsdlaDVRWHKTGKTKPVMV-D 237 799************888887766666555.5677765544444444....4567788******************75444555889************.9 PP NAM 97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++ g+kk++v+y + + k++kt+Wvmh+y+l EMT21053 238 GQHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 271 99***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-32 | 128 | 290 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.78 | 143 | 290 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 144 | 271 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 504 aa Download sequence Send to blast |
MTGHDWFGCC GVDGWIASVL CSFAVKLAIA RQKDDVFALV MVERDIFFLY RVSSMYALCS 60 IAIKELTLCS IAIQPLVLPF CGYNAVDRTS WLIDSQRIAS KIKNVSGSRD LSKQKWLSNP 120 TKECPNCSHS IDNSDVVHQW PGLPKGVKFD PSDQELLGHL LAKHDRAGSQ PHPFIDEFIP 180 TVEEADGVKQ DGSVSHFFHR TFKAYNTGTR KRRKINTSDL ADVRWHKTGK TKPVMVDGQH 240 LGCKKIMVLY MSTVKGGKPK KTNWVMHQYH LGTGEDEQNG EYVVSKLFFQ QQNGQKSALE 300 LTNTDVMETT VAEADLTDLP EPTAEEEDER ISSISNQEFL LNNEYNADEE ALHSHEHNTY 360 QENGDCEIKM EEKAADENAV YPSSEKPEDG DNPPSQDPNL WEGDSQFLLD SQQLAENLAI 420 CDEFLQSQTS CGDGDEPGSI KPRLAVYAQL PVEDLKKDLQ EYKDLGPSDN ANLEPENNAE 480 LRLSQLEFSQ DSYTIGIFTG QAAD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP729147 | 1e-109 | KP729147.1 Stipa purpurea microsatellite ZH4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160968.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-111 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M8BH25 | 0.0 | M8BH25_AEGTA; NAC domain-containing protein 8 | ||||
STRING | EMT21053 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-110 | NAC family protein |