PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20860
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 441aa    MW: 48377.8 Da    PI: 6.5119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20860genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.65.1e-1172117449
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                ++  r vtf kRr g++K A  L   ++a+vavi+   + k+y +
  EMT20860  72 HDDKERDVTFFKRRGGLFKSAADLNAITGARVAVILETGNKKMYSF 117
               57889**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-759120IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.27361121IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-76383IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-1564140IPR002100Transcription factor, MADS-box
PfamPF003198.6E-1572117IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-78398IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-798119IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVTLQDVAKP ARALGGMKAP NRSFYATSTV VDILEFGPKT QMKGVAHLVG LFVIIGFGMP  60
RRGRRLGIAY VHDDKERDVT FFKRRGGLFK SAADLNAITG ARVAVILETG NKKMYSFGTP  120
SAGPIVDVFL SAPPLGNQLT EKETSAKIAR LQSEVARLDM EHGMEDKRNQ LSIQHVKQIQ  180
EQYPGMVANL IFSKEQDLNL EDAKKLFNEL SRVHEDTRRR LPKLHHSYKA ITGGASVIQN  240
MLPSSGPPPK SLKTIPSLVH SMWDHHLPQH HMPSTPLISP PDHNMEPVFP RAPQMFHVAS  300
TTSAPQFVSQ LQGIPNQEQD LPPTDLHVED YISPCDTVHP PQNNASPIST TEHNMEASPL  360
LVYSSGNDFV VDDPFGQDQW GFALPDQQLY NGFLGMDGYL GYNGTDVGQS SMGNGGWVDA  420
PPESSPGKQD VDAHIENGGL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.11e-141floral homeotic protein APETALA 1-like
TrEMBLM8B7X50.0M8B7X5_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT208600.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-12AGAMOUS-like 62