PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20804
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 622aa    MW: 70126.8 Da    PI: 7.2973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20804genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22e-1152476162374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL++cA+ vs +d + a+ lL++++++as +gd  qRla++f+++L+arla+++s++yk  + s+ +    ++ l+a++l+  ++P+ k+sh  aNq+I
  EMT20804 247 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CADILKAYQLYLAACPFKKISHYFANQTI 344
               789**********************************************************99999999...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               ++ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++ee+g+ L+++A++++vpf+++  +a+++e++++e+L+++++E 
  EMT20804 345 MNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFKYHG-IASQFEAVQVEDLHIEKDEI 444
               ********************************************************************************.7******************* PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               l+Vn++++ ++l+desv  es+r+ vL+++++++P+v+++   + ++n++ F+ rf eal  +sa fd+lea++pr++eer  +E  +++re+ nv++ceg
  EMT20804 445 LIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCEG 545
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                er er et+++W+ r ++aGFk++pl+ +++k a+  ++ ++++ + ++e++ +l++gWk+r L+++S W+
  EMT20804 546 MERMERPETYKQWQVRNQRAGFKQLPLDPEIMKRAREKVKCYHKN-FIIDEDNRWLLQGWKGRILYALSTWK 616
               ****************************************99966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.601220597IPR005202Transcription factor GRAS
PfamPF035147.0E-113247616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MQAPPALEFP SAEFLQPPQF YQDLSPESCV VEAGGAWPYD AMEFNPLPDA LLSQSSSFAS  60
SNGSSVAFSE GFEPWLSTAA AVPSDAGLSD LVLQSQQAVQ FSRGFEEGSR FLPQESKLVI  120
DIDSLPSVRV KEDKKVVEVK REKADSEVAI HRGKKHFYGD DLDADEVRCC KHSAPVVDAD  180
HLVREMMDKV LLCNGETCSR GVKELREALQ HDVAAHSGGA HGKGSGHGKG RGKKQVKQPK  240
KEVVDLETLL IHCAQSVSID DRRSATDLLK QIRQHASANG DGDQRLAHCF ANGLEARLAG  300
NGSQIYKLHT ISRFACADIL KAYQLYLAAC PFKKISHYFA NQTIMNAVEK AKKVHIVDFG  360
VYYGFQWPCL IQRLSKRPGG PPELRITAID TPQPGFRPAE RIEEIGRYLS DYAQTFKVPF  420
KYHGIASQFE AVQVEDLHIE KDEILIVNSM FRFKTLMDES VVAESPRNMV LNTIRKMKPH  480
VFIHGVTNGS YNAPFFVSRF REALFQFSAH FDMLEANIPR DNEERLLIES TIFSREAINV  540
ISCEGMERME RPETYKQWQV RNQRAGFKQL PLDPEIMKRA REKVKCYHKN FIIDEDNRWL  600
LQGWKGRILY ALSTWKANPQ SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-482506168375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188125.10.0scarecrow-like protein 9
TrEMBLM8BFT30.0M8BFT3_AEGTA; Scarecrow-like protein 14
STRINGEMT208040.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-168GRAS family protein